RNA id: XR_002470275.2



Basic Information


Item Value
RNA id XR_002470275.2
length 620
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110501943
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45582551 ~ 45587712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagGGACGCTGTGACGTTTTCACAAACCGCTATCCCGGATTCGCCGCCACATCCCGGTACTCTTTTCTCCGCCGCCCTTGAAAGAGAACGTCCTATGTGAAAGATAGCACTAGTTGGTCCCTGGAGACTGCTGTCTGGTTGGAGAGTCACCTGCTCCCCTCCATGGAGACAGACCAGCATGATCAACAGTCGGCTGGAGGGAGTTGGTggttacggttacagaagtcatcaaaagagagcgcctggggaataggagtggagctaggcactgcaggtcctggattaacctctacatcaccagaggaacagaggaggagttggTGGTTGACCCATCAGAGGAGTTGTATTTATGGATGGCTACAGGTCATGACCTTTCCCATCTTCTACGTCTGGGTTCTCTTCATCTGCATATGCTTACATCAAATGTAGCCTATGGCTGGCCGGTTATCCATTTCAAGGGGTTCGCTTCGTGTCAATgtactgtttctctgtttctctgttcttcttctgttgtttatttttttgtgtttttcctCTTTGTGTAAAATATGTTGAGACCTTGTACACATGAAATAAATTGTGATTTGATTGGAAAGATAATAAAGAGAAGAATAAATAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2076967 lncRNA downstream 5663 45576523 ~ 45576888 (-) True G1815475
TU2076958 lncRNA downstream 33680 45548385 ~ 45548871 (-) True G1815466
TU2076955 lncRNA downstream 36132 45546133 ~ 45546419 (-) True G1815463
TU2076873 lncRNA downstream 133390 45389697 ~ 45449161 (-) True G1815400
TU2076876 lncRNA downstream 148825 45392296 ~ 45433726 (-) True G1815402
TU2076981 lncRNA upstream 4473 45592185 ~ 45595699 (-) False G1815488
TU2076982 lncRNA upstream 4473 45592185 ~ 45593793 (-) True G1815488
TU2077014 lncRNA upstream 52503 45640215 ~ 45643396 (-) True G1815516
TU2077028 lncRNA upstream 68845 45656557 ~ 45657002 (-) True G1815523
TU2077060 lncRNA upstream 108380 45696092 ~ 45697548 (-) True G1815544
XM_036959419.1 mRNA downstream 3645 45550854 ~ 45578906 (-) True LOC110501933
XM_036959418.1 mRNA downstream 3647 45550854 ~ 45578904 (-) False LOC110501933
XM_036959417.1 mRNA downstream 3648 45550854 ~ 45578903 (-) False LOC110501933
XM_021579813.2 mRNA downstream 38561 45533097 ~ 45543990 (-) True LOC110501935
XM_036959416.1 mRNA downstream 61719 45519847 ~ 45520832 (-) True LOC118943614
XM_036959422.1 mRNA upstream 115241 45702953 ~ 45726393 (-) False LOC110501932
XM_036959423.1 mRNA upstream 115241 45702953 ~ 45726394 (-) True LOC110501932
XM_036959085.1 mRNA upstream 423403 46011115 ~ 46028506 (-) True LOC118943596
XM_036959427.1 mRNA upstream 531676 46119388 ~ 46156972 (-) True ints6
XM_036959443.1 mRNA upstream 1282119 46869831 ~ 46974131 (-) False spopla
TU2075825 other downstream 908663 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 1029131 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2904791 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2977531 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 3193278 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 251038 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 1637839 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 1813410 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 1883582 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2474337 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile