RNA id: XM_036959423.1


Basic Information

Item Value
RNA id XM_036959423.1
length 6006
RNA type mRNA
GC content 0.59
exon number 4
gene id LOC110501932
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45702953 ~ 45726394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGAATTTCATCTGAGCCAACTGTACAGAGAGGGAAGAAACTTTGAGACAAATGTAGGAATCGCAACGAGAGAAAGCAGGActttcagcagcagcagcacggaGGGAGAACACAAGGATATCTTATCTGGGGTGATCCCTCGTCGCAATCTCTCACGGtctgacactctctctctgtctctctcttttttctctctctctcccagacagaggagaggagcagcagtGTGAAAGAACGAGTCGCTACTGGAACCGTGTAGCAGCCGCAGCTCTATTCTATTTTCTATTCATTAAGCTTTTCCTTTTATTTCTCACCTGCGGACCCCGGTTGAGATGGTAGAGACACACTGATTGACCTGAGGACCCCGGTTGATATGGCAGAGACACACTGATTGACCTGAGGACCCCCGGGTTGATATGGCAGAGACACACTGATTGACCTGAGGACCCCGGGTTGAGATGGCAGAGACACACTGATTGACCTGAGGACCCCCGGGTTGATATGGCAGAGACACACTGATTGACCTGAGGACCCCCGGGTTGATTTGGCAGAGACACACTGATTGACTGGAGGAACCTGTGGAGAGACTAAAGGATCTCACTCCACACACCTGAGTGTCCAGAGGACTGATCCTAGTTGGCCACAGGGTGAAGGATTAAGGGACAAGGATGGTACTTGGAGGATCCACCAGAACACAACATCTGACGCAGAACTTTCGGGACACTCAAGGAAAGAATCCTGACATTACCAAAGCTATTATCCATATAATAGTCTACAATTGTCCATTCATATCGAAAGCAAAAGTACAAGAGGAACTGGAGAGGGGAGTATGGGACGTTGGATCCGTGGTGGAGTGACTCCTGGTTGGTTCCCAGGGGCCCGATGAGTGGCAGCAGCCATAGCACCAGCCTACTTCGGGGCCGCCGCTTCTACTGCCGGGAATGGGCCCTGGAAAAGCTTGGGCGCTGTCTGGAGGCCAGGTCCACTCCCGGCCGGCCCCCGGGGGTCCTGGTGACTGGGGGGCCCGGGGCAGGGAAGACAGCCCTATGCACAGAGGCAGTATGGCCCACATCGGACGCAGGGCTTGGGTTGGCACCACGCTGTTTGGGGTTTCACTTCTGCCAGCGGGAGGACGGGAGGACCGTGGCGGTGTGGAGGTTTGTCCTGGGCCTGGTGGATCAGCTGAGGGTcagccccctcctccccctgggGTACAGGGACACACTGGACACCCCCATGGTGGCGACCACCTTGGAGCCCCTACACTGCCAGAGGGACCCGGATGACACCTTCAAAAGggcagTGTTATTGCCTTTGCTGGGCCTCCCTCCCCCAGGGCAGCCCTTGTTTCTGGTTGTGGACTCCCTGGACTCGGGGTTTGAGTATGGGGCCGGTGAGGGGTCATGCAGTGCTGGGGCTCCAGGGAGGAACAGCTCTATCTCAGAGCTCCTGTCCAGCCACCAGCACCTCTTCCCCAGCTGGCTGCTCCTGGTCTGCTCTGTCCGCAGACAGAACAAGGCTGTGTGTAAGATGTTCTCAGgtttCCGTAAGCTGTGTCTGGATGACCTGCGGAAGCCGGCGCCAGTGCGTGACGTGCAGCAGTACATCTTGCGGAGGCTGGACCAGGAAGGGGCGCTCCGCCGTCAGCTGACCCCCGAGACAGCCGACATGCTCAACCTGCTGCACATCAAGAGTGGCGGCTGCTTCCTGTTTCTGGAACGCGTTCTAGACGGCGTGGCGGGGGCCTTGGTGGGTCTCCGGGAGATCCGAGACATCCCCGGGACCCTCAACGGTCTCTACCTGTGGCTCTGCCAGAGACTCTTCCCCAGGTGCCTGTTCCTTGAGGTTAGGCCCCTCCTCAACGCCCTCCTGGCCTCCCCTAGGCCCTTCACCACCCAGGAGATCTACACAGCCACCTGGACCCAGGACATGTCCCTCAGCCCTATGGACTTCCAAAGCAGGCTGAAGGCTCTGTCTACGCTGCTCATCGACGGGCCGGGAGGCAGCAAGCTTCTGTTCCATGCTAGTTTTGCAGAGTGGCTGACGGACGTGAAGTATTGCACCCAGAAGTATCTGTGTAGCGTGTCTGAGGGACACACCATGCTGGCCATGGCTCTCACCCTGCGCGCCCCACACCTTAACACAGAGGACACCTGTCAGATGGGCTCGCACCTGATCAGCTCAGGCATGCACAAGGACAAACCTGCCCTCCTGGCTCTATGGCTGTTGTGGGCAGATGTGGCCCCTCTGGCTAGCTCCTCATACCCCTCTTCCCCTGCCTCTCAGCCCCCTGTCCTGGTCAAGCAGGAGGTCCTCCAACTGCTGATGAAGAGTGGGGTGTTCCCTCCCTCCTGCGCCCCAGACAGAGGCCCCAACATGGGGGTACACTGTGCAGGACAAGGGGGGACCATCATCCGGCGGGTGCTGGAGAGGCAGGACTCAATGAGGATGCTCTTGGACAGCGGGGTCAGTGTGAACCGGACCGACCCCACAGACGGACGCACCCTGCTGGCCAGCGCGGCTCACGCAGGCTCAGCCGACGTTGCCATCCTGCTCCTGTCCCGAGGGGCTGACCCTTTGATCAGTGACCACCAGGGCCAGACACCCCTGACGCTGTCTGCCAGGCAGGGCCATGTTAAGGTGCTGGGAATGCTGCTGGACTGGGCCAGGGGTCAGCAGCCAGAGGCCGCCGTGAGTATGGTGGAACACGCGGACAGCGAGGGCTGGACAGCCTTGCGGTCTGCGGCCTGGGGGGGTCACACTGAGGCAGTGCACCTGCTGCTAGATGCGGGGGCGGACGTGGACGGGTGTGATGCGGAGGGCCGGTCGGCGCTGAGGGCGGCAGCCTGGGGGGGTCATGAGGAGATCCTCCTCACACTGCTGGACTACAGAGCGCAGGTGGACATGGCAGACCGGGAGGGCCGCACGCCGCTGATCGCTGCCGCCTACATGGGACACAGGGAGGCAGTAGAGATCCTGCTAGACCACTGTGCGGAGGTCGACCTGGCCGATGGAGACGGACGTACTGCCTTGTCCGTGGCTGCCCTCTGTGTGCCCACAGCAGCCGGGGTCAAGGGTTATGGAGACGTGGCCAGCCTGCTGTTGGAGAGAGGGGCTGACCCGGGGCACAGGGACCGGAATGGGATGACCCCTCTGCTGCTGGCGGCGTATGAAGGTCACGAGGAGGTGGTAGAACTGTTATTAGAAGCTGGGGCCGACGTAGACGAGAGCGCCGGGCCACATGCCGCCGCCGCTTCTGCTGCTGTCACCCCACTGTTGGCGGCAGCCGCCATGGGCCATACTAAGACGGTGGGCAGGGTGCTGTTCTGGGGCGCCTCGGTGGATAGCATCGATGGGGAGGGTCGTACAGCTCTGAGCCTGGCAGCAGCACAGGGCAGCGTGGAGGTGGTCAGAGCTCTCCTGGACCGAGGGCTGGATGAGAACCATAAAGATGATCTGGGCTGGACCCCGCTGCACGCCGCCGCCTGCGAGGGCCACCGGGGGATATGTGCCATCCTGATGGAGAGTGGGAGCATGGCTCGTGTCGGAGAGATGGACATCGAGGGACGGACGCCCCTCATCTTGGCTGCGCAGGAGGGCCACTGTGGCACAGTGAGGCTGCTGCTGGACCACCGTTCACCCATTGACCACCGGGCGTACGACGGCCACTCTGCGCTGAGCGCCGCCGCCCTGGAGGACCACGCTGAGGTGATGGAGCTACTGATGAGGCGGGGCACCGACACGGATGTACGGGACGCAGAGGGCCGTCCGCTGCTCTACCTCCTGGTTCTGGAGGGACATCTGGACATGGCTGCCCTCCTCATAGAGAAAGGGGGCGTTCCCTTGGAGTCCCGGGACATGGAGGGGCGTACGGCGCTACACGTGGCCACCTGGCAGGGCAACCTGGAGGCGGTGGGGCTGCTGGTGAGCCATGGGGCGGACCCTAACGCCCAGGATGGGGAGGGACGACCCCCCCTGCACTCTGTAGCCTGGCGGGGTCATGTGGCGCCTGGTCGTCTGCTCCTGGAGGTCAGGGGGATCAACGTGGATCTGGCCTGTAGACAGCAGGGGGCCACTGCACTGAGCATCGCGGCTCAGGAGGGCCACGCCAACATCGTTGCCATGCTACTGGAGGGAGGGGCCAACCCGGACCACATAGACAAGTACGGCCGCAGCCCCGTCAAGGTAGCCGGAAAGCGGGGCCACTTCACCATCGTCAGGATGCTGGAGAGCTACGGAGCCAAACCGTACTCAAGCCTTCTGCCCCAATCGAATACCCGGTCGCCCAAGTCATCCACTGTGAAGAGCCTGTACTCAACCTGCTCAGAGAGTAACGAGGCTAGCGTCTCCACCTCCTCAGCCTCGGCCTCCTGCTCCCCAGGCTCCACAGCCGAGCACTTCCACTCCATCCAGAGCTCCCAGACATCCTCCTCCACAGCCCACTCCCTGGCCACGGTGCAGACCGTCCCCGCTGACAGCCTGTCTTTCACCCAGCAGATCCAGCAGCACTCCCTCCCCCGCAGCCGATTTGGCCATTCCACCCTGCCTCCGCCAGACTCCGCTCATGGCAGCCTGCACAGCAGCAGCCGCAGAGCCCAATGCCCTAAGGCCAGCCCTCCTCCACCCACCCTCTGCACAGTCACGGCCACGGTACATGACTCTGAGCAGCCTTGCAAAGGCTACCCATTAGGATTCGACTATCCCAGTAAACACAAACCCCCCAGCCTGATCCAGGAGGAGAGGTCTCTGTACGAAGGGGGGAGGTGGAACTCTGTTATGGCTTCTCTAGGGGTGACGCCTGGACAAGATGGCCCCAAAAACAGGAACTGTCTCCCTATGGGATACCCTTACGAGCTCCAGAGCCCGGCCCAGAGAGAGACACGGGAGGAGAACCAGAAGATGTCTATAAAGTCCAGTAGTGCCTTATCTCCTCCCTGCATGGTGGTCATGACGACCACGGACCCTCAGCTCAACCTGAAACAGGCCATCAAGCTGCAATTTGAAGGGCCCACCAGCGCTGCCTTATACAAAAGAGAGACGCCCCTGTGAACTACTGACACCTACGGGCAGATGATCTCTCCGCTCCACCCTCTGGTCATCCCACCCTCTCCGCACCACTCTCagcagagaagatgagagaggaagggatCTCTCCACTCCACCCTCTGGTCATCCCACCCTCTCCACTCCACCCTCagcagagaagatgagagaggaagggatCTCTCCACTCCACCCTCTGGTCATCCcaccctctccactccactctcagcagagaagatgagagaggacgGGATCTCTCCACTCCACCCTCTGGTCGTCCCACCCTCTCCGCTCCACTCTCagcagagaagatgagagaggacgGGATCTCTCCACTCCACCCTCTGGTCGTCCCACCCTCTCCGCTCCACTCTCagcagagaagatgagagaggaagggatCTCTCCACTCCACCCTCTGGTCGTCCCACCCAAGGCTGTAACTAGGGTTTTGAGTTTAAGTTTGGTTCTGGAAGGGTGAAGCTCATTACCTTgaaatgctatttggagaacaaCACATCATTAACCCCTCGGCTGCTTCATTCACCTCAGGCCATCTGCAAACACCTAGCCCATTAGCTATACAGTTGTAATGTCGTACCTCTGAAAGGGGGGAGATATGAGAAATGATTCACACTGACACGTAGCATCAGTGACAAACTGAAAACGTCTGGTTGGTTGCATTTTAATGTTGGACGATATGGAAGATAGGCCATGTGGAGACGTTCgtatttattttttgcttgtTCGATAAGGGCTAGTACAGATTTTCTCACGGGGCCCCTGACCCCAAGTTTGGGAACGACTGTACTAACCTCTCTGTCTGCTTACTCTCTGTctgcctcctcttcttctttctcctgaaTGCATTGTAGTCTGCCTCAGCCTCACCACTGAGTTCcacatcactgtctgtctcagtagCCTGCTCTCTGTAAAGTAAAGTTACTATGAAAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2077060 lncRNA downstream 5405 45696092 ~ 45697548 (-) True G1815544
TU2077028 lncRNA downstream 45951 45656557 ~ 45657002 (-) True G1815523
TU2077014 lncRNA downstream 59557 45640215 ~ 45643396 (-) True G1815516
TU2076981 lncRNA downstream 107254 45592185 ~ 45595699 (-) False G1815488
TU2077080 lncRNA upstream 34792 45761186 ~ 45761462 (-) True G1815562
TU2077091 lncRNA upstream 43095 45769489 ~ 45769719 (-) True G1815572
TU2077092 lncRNA upstream 44413 45770807 ~ 45771081 (-) True G1815573
TU2077094 lncRNA upstream 49848 45776242 ~ 45776508 (-) True G1815575
TU2077100 lncRNA upstream 55364 45781758 ~ 45782507 (-) True G1815578
XR_002470275.2 mRNA downstream 115241 45582551 ~ 45587712 (-) False LOC110501943
XM_036959419.1 mRNA downstream 124047 45550854 ~ 45578906 (-) True LOC110501933
XM_036959418.1 mRNA downstream 124049 45550854 ~ 45578904 (-) False LOC110501933
XM_036959417.1 mRNA downstream 124050 45550854 ~ 45578903 (-) False LOC110501933
XM_021579813.2 mRNA downstream 158963 45533097 ~ 45543990 (-) True LOC110501935
XM_036959085.1 mRNA upstream 284721 46011115 ~ 46028506 (-) True LOC118943596
XM_036959427.1 mRNA upstream 392994 46119388 ~ 46156972 (-) True ints6
XM_036959443.1 mRNA upstream 1143437 46869831 ~ 46974131 (-) False spopla
XM_036959444.1 mRNA upstream 1143437 46869831 ~ 46974132 (-) False spopla
XM_021579869.2 mRNA upstream 1315831 47042225 ~ 47061327 (-) True LOC110501995
TU2075825 other downstream 1029065 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 1149533 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 3025193 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 3097933 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 3313680 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 112356 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 1499157 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 1674728 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 1744900 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2335655 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile