RNA id: TU2079192


Basic Information

Item Value
RNA id TU2079192
length 2857
lncRNA type read_through
GC content 0.39
exon number 4
gene id cfap65
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47476398 ~ 47553609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attccaaaaacacattttttgtttaTTAAAAAGGAATTCAGTCCACAGTAGTTAAGACTTTGGCacctacaatatatatatataaaaaaaaaataacaaaaacgtgTACACCCCAAATAGCATTAAAACAAAATGCTTGGACAAAAGAGATAAATTAAAAACAGCAGTTGAGGTGGGTATGAAACAATGCAACTCAACTGGCAGCCATTTTAGAGCTTCCGTTCACAAAAATGGCAGAAGTACATGAACACAACAGATACAATTCTGGACATTGAATGAACACCCACTTGCAGTGTACCTCTGTGATACAACTCTTGCATTAAAGCAGTGGTATTCAGCGGGGaccccattccccccccccccccaccccccgatTGAATTTCTGGGGACCAAATTTCTTATGATCCCACCCCATATCAAATAACAaccttcaaaaaaaaaaatattctacaTAAACGTCTTCTCAAAAATGaaaagaaaccaataaatacatttactcaataacattttatttttctaaTTATTTCTCAAAAACGTTTGTATAatgtcccatacaataatctgtactcTTGGTTTCTGGTTCttcatttttaatatatatataaaaatggcgACCCCACTCAGACCAcgactttgaataccactgcaTTAAAGACCTTGGTTTTAAAaaggaatgttttttttgtttttttgttagaCTGGTAGTTGAAGTCTCCAAAGAGATTTGAAATGCATGAAGACAAGGTGCTCATGCGAGACCTCTGTATCCAAGTGgttcaccatatagggaatagggttatacGTCAAAACAGCGATCTTATTTCTCTGTAGAACCATTTGAGCTCGGACGGGATCGGTTGGAAATATTATCCATTCCAGATAAGTCACGATGCCGGCAAGAGTTTCCCCCATATTGTAAACTTCTGAATGGGGTAAAATCTCACATCAGAGAGAGAAAGCTCTGGTTCGGGCAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGATTAGGAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGATTAGGAACAGCACAGAGTAGGAACAGAGTAGGCTACAGGAGGATTGGGAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGAAACAGAGTAGGCACAGGAGGAATACTGAACGGCTTTAGAACCTTTACAGATTTTCCATTTTCTCTTTTCATGGGAATGTCTCGAAGGACTAGGTAGGACAACGGAACCAAACATTAAAATATAAAAGACCCTTTCTttgccttgggggggggggggtattttgaAGTGACGCTATAGAAAGGAGTGGCAATGTGGAGAAGCAGCAGGATGGTGGTTAATTGGTCAGACCAGACCACTGATCAAGGTTAGTGAATGACAGGAACAGGAAGGCAGCACGTAGTTGACACTTCCTACAGTAATATGTTCCATGGAGTACTTCTGTGACGGCACGGGAAGACATCGCCATAAAAATACAAGTCTATAAGAATTCAATAGGAATTATATTTCCATGGGCGACACATAGGAAGTCCCACCAAGTTgactacttaaaaaaaaaaaaaaaaaaaaatggtgcatGCTAGCAGTCTTTTTGTGAGACTGATCCTAGTGCACTCTAGGTTTTATAACTCTGTAAGTCACAGGTACAgcgccttcaggaagtattcgcacacctcgactttttccacattgttgttgttgttacagcctcaatttaaaatggattaaatagacaTTGTGTGTCAATGATTTACACACgattaccccataatgtcaaaatggaatatCGTTTTGTAGAACATTTAGTAAAGTAATAAAAATGTTAAAAgttgaaatgtattgagtcaataagtattcaacccctttgtaatggcaagcctaaagttcaggagtaaaaatgtgcttgacAAATGGCATAATAAGTtgtttaaccttttttttttatgacTATCCCATCTCTTTACCCCACACAAGTGTCTGTGAGGTCACtcaatcgagtagtgaatttcaagcaccgattcaaccacaaagacaagggaggttttccaatgcctcgcaaagaagggcacctattggtagcagacactgaatatccctttgagcatggtgaagttattaattacactttggatggtgcatctatacacccagtcactacaaagatacaggcatccttcctaactcagttgccggagaggaaggaaaccactcagggatttcaccagaacaataacctataacacaaggccaaatctacactggagttgcttaccatgaagacattgaatattcctgagtggccttgttacagttttgatttagagatcagcttgaaaatctatggcaatacttgaaaatggctgtctagcaatgatctacaaccaacttgacagagcttgtacaattattcttttttttttttaaatgccaaatattgtacaatccaggtgtgcaaagctcttagagattgaCCCAGAAAAGtcctacaaagtattgactcagggatgtgaatacataagtaaattagatatttatgcatttcattttcaatatttgctaaaaatttctaaaaacattttcactttcattaaaaaaaatctatttaatccattttgaattcaggctgtaacaacaagtTGTTAAGTAAGTCCAGaagactttctgaaggccctgtaatgTGAGGAGTctgaggaggaggatgtggttctcctctccttctttactCGGAGGATTGCTGTACATCTGCTAGGAGCTCTGGTCTCAGACACTCTATAGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2078706 lncRNA downstream 74351 47400985 ~ 47402047 (-) False G1816929
TU2078690 lncRNA downstream 86002 47389657 ~ 47390396 (-) True G1816915
TU2078672 lncRNA downstream 116898 47359037 ~ 47359500 (-) True G1816897
TU2078671 lncRNA downstream 119725 47356075 ~ 47356673 (-) True G1816896
TU2078597 lncRNA downstream 188976 47280767 ~ 47287422 (-) True G1816836
TU2079221 lncRNA upstream 4282 47483730 ~ 47484440 (-) True G1817290
TU2079250 lncRNA upstream 39528 47518976 ~ 47521583 (-) True G1817318
TU2079256 lncRNA upstream 40866 47520314 ~ 47527293 (-) False G1817319
TU2079252 lncRNA upstream 44576 47524024 ~ 47527293 (-) True G1817319
TU2079257 lncRNA upstream 45673 47525121 ~ 47525354 (-) True G1817320
XM_036959449.1 mRNA downstream 215932 47177045 ~ 47260466 (-) False trpm2
XM_036959447.1 mRNA downstream 215940 47170403 ~ 47260458 (-) False trpm2
XM_036959448.1 mRNA downstream 215941 47170403 ~ 47260457 (-) False trpm2
XM_036959445.1 mRNA downstream 372570 47086871 ~ 47103828 (-) True LOC110501994
XM_036959446.1 mRNA downstream 372593 47086871 ~ 47103805 (-) False LOC110501994
XM_036959453.1 mRNA upstream 149432 47628880 ~ 47632649 (-) False LOC110501961
XM_021579839.2 mRNA upstream 149432 47628880 ~ 47635640 (-) True LOC110501961
XM_036959458.1 mRNA upstream 253771 47733219 ~ 47834252 (-) False ptprna
XM_036959457.1 mRNA upstream 253771 47733219 ~ 47834254 (-) True ptprna
XM_036959461.1 mRNA upstream 417609 47897057 ~ 47972131 (-) True tmem198a
TU2079216 other downstream 3014 47471294 ~ 47473384 (-) True G1817287
TU2078705 other downstream 74351 47401122 ~ 47402047 (-) True G1816929
TU2078613 other downstream 249752 47225551 ~ 47226646 (-) True G1816841
TU2077141 other downstream 1635416 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 2802510 44673447 ~ 44673888 (-) True G1814480
TU2079567 other upstream 582601 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 789339 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 979578 48459026 ~ 48460040 (-) True G1817836
TU2080079 other upstream 990150 48469598 ~ 48470035 (-) True G1817968
TU2080196 other upstream 1147916 48627364 ~ 48627846 (-) True G1818059

Expression Profile