RNA id: TU2044886


Basic Information

Item Value
RNA id TU2044886
length 219
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1786282
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20187583 ~ 20187801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAGATTGATAGAGATTTGCCTATTTCCTGTCATTATATTGTAAATGTGCTGTGTGTTGGTATCATGATGTAAAGGAATTGCTTGTTGGAGGTTATTGCTTTGTTCATTGGACCTTCTAGTAATATGCATGGTTATTGGCTAAGAACTAAGCGCAGGcggggtaggcaaccctgttcctACAGTATAGTGCTGCAGTGTGTGAAGGCTTTTATTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044884 lncRNA upstream 3417 20183899 ~ 20184166 (+) True G1786280
TU2044765 lncRNA upstream 190373 19996680 ~ 19997210 (+) True G1786167
TU2044593 lncRNA upstream 418751 19768473 ~ 19768832 (+) True G1786007
TU2044592 lncRNA upstream 419167 19768029 ~ 19768416 (+) True G1786006
TU2044588 lncRNA upstream 421669 19765638 ~ 19765914 (+) True G1786002
TU2044926 lncRNA downstream 76698 20264499 ~ 20265113 (+) True G1786321
TU2044934 lncRNA downstream 93138 20280939 ~ 20281890 (+) False asb1
TU2044936 lncRNA downstream 93138 20280939 ~ 20281854 (+) False asb1
TU2044935 lncRNA downstream 93212 20281013 ~ 20281952 (+) True asb1
TU2044939 lncRNA downstream 94397 20282198 ~ 20282420 (+) True G1786329
XM_036958943.1 mRNA upstream 11923 19997839 ~ 20175660 (+) False adarb1b
XM_021579250.2 mRNA downstream 18601 20206402 ~ 20251481 (+) False traf3ip1
XM_021579251.2 mRNA downstream 18601 20206402 ~ 20259273 (+) False traf3ip1
XM_036958946.1 mRNA downstream 18601 20206402 ~ 20259273 (+) False traf3ip1
XM_021579252.2 mRNA downstream 18602 20206403 ~ 20251481 (+) True traf3ip1
XM_036958947.1 mRNA downstream 81845 20269646 ~ 20276866 (+) False asb1
TU2044524 other upstream 525657 19661109 ~ 19661926 (+) True G1785947
TU2044159 other upstream 559823 19616995 ~ 19627760 (+) True LOC110501568
TU2044113 other upstream 615144 19570580 ~ 19572439 (+) False ybey
TU2043879 other upstream 989869 19186488 ~ 19197714 (+) True LOC110501548
TU2042944 other upstream 1420443 18766458 ~ 18767140 (+) True G1784476
TU2044933 other downstream 93212 20281013 ~ 20281854 (+) False asb1
TU2044940 other downstream 95380 20283181 ~ 20284571 (+) True G1786330
TU2046423 other downstream 946464 21134265 ~ 21136477 (+) True G1787719
TU2047590 other downstream 1807563 21995364 ~ 21996093 (+) True G1788811
TU2047594 other downstream 1810672 21998473 ~ 21999623 (+) True G1788815

Expression Profile