RNA id: TU2044940


Basic Information

Item Value
RNA id TU2044940
length 1391
RNA type TUCP
GC content 0.50
exon number 1
gene id G1786330
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20283181 ~ 20284571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggccggtgattttaatgaaggaaaactgaaatccgatttacctaatttctaccagcatgtcacctgtgcaactacaGGGGGGGAAAAACTCtacaccacctttactccacacacagagacacatatgaagttctccctcgccctccatttgtcaaatctgaccataatgctatcctcctgattccagcttacaagcaaaaactcaaacaggaagcaccagtgacacgcttaatacggaagtggtccgatgaagtggatgctaactacgtgactgttttgctagcatactgtagactggaatatattccggcattcatccgatggcattgaggagtttaccacaatgccattgtccccacagtgacagtacatacatatcccaatcagaagccatggattacaggcaacatccgcattgagctaaaggctagagctgccgccttcaaggagcaggacactaatccgggcgcttataagaaatcccgctatgctctccgatgaaccatcaaacaggcaaagcatcaatacagggcagagatcaaatcctactacacctgctttgatgcttgtcggatgtgacagggcttgcaaactatcacgaaTTACAAAACTAAACCCAGCCGAGAGCTgaccagtgacgcaagcctaccagacgagctaaatgccttctatgttcgcttcgaatctagcaacactgaaccatgcctGAGAGCGCCAGCTGTTTCGGGTGACtgtatgatcacgctctccgtagccgatgtgagtaagaccttcaaacaggtgGCCATTCACAAGGTGGATTACCGGTACGcgtactccgagcatgtgctggCCAGCTGGCAAGactcttcactgacattttcaacctctccctgaccctgcctgtctgtaatacctacatgcagactaccatagtccctgtgcccaagaaggccatggtaacctgtctaaatgactacctcCCCGTAGAACTCAcacctgtagccatgaaatgttttgaaaggctggtcatggctcacatcaacaccatcatcccagaaaccctggaccaaccctaatttgcataatgcccaaccagatccacagatgatgcgatctcttgcactccacactgccctctcccacctggacaaaaggaagacATACCTACGCAAGAATGCTGTTGACtgcattgactacagctcagctttcaacaccatagtgccctccaagctcatcactaagctaaggtccctgggactgaacacctccctctgcaactggatcctggacttcctgacgggcagccccccaggtggtgagggtaggcaacaacacatctgccacactgaccctcaacacggggcccctcaggggtgcgtgcttagtcccctcctgtactctgttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044939 lncRNA upstream 761 20282198 ~ 20282420 (+) True G1786329
TU2044935 lncRNA upstream 1229 20281013 ~ 20281952 (+) True asb1
TU2044934 lncRNA upstream 1291 20280939 ~ 20281890 (+) False asb1
TU2044936 lncRNA upstream 1327 20280939 ~ 20281854 (+) False asb1
TU2044926 lncRNA upstream 18068 20264499 ~ 20265113 (+) True G1786321
TU2044942 lncRNA downstream 3154 20287725 ~ 20288393 (+) False G1786331
TU2044943 lncRNA downstream 3289 20287860 ~ 20288393 (+) True G1786331
TU2044960 lncRNA downstream 32908 20317479 ~ 20318069 (+) True G1786343
TU2044971 lncRNA downstream 60229 20344800 ~ 20345227 (+) True G1786354
TU2045515 lncRNA downstream 104880 20389451 ~ 20391109 (+) False G1786870
XM_036958948.1 mRNA upstream 1329 20269646 ~ 20281852 (+) False asb1
XM_036958947.1 mRNA upstream 6315 20269646 ~ 20276866 (+) False asb1
XM_021579251.2 mRNA upstream 23908 20206402 ~ 20259273 (+) False traf3ip1
XM_036958946.1 mRNA upstream 23908 20206402 ~ 20259273 (+) False traf3ip1
XM_021579250.2 mRNA upstream 31700 20206402 ~ 20251481 (+) False traf3ip1
XM_021579956.2 mRNA downstream 53557 20338128 ~ 20343956 (+) True LOC110502064
XM_021579254.2 mRNA downstream 75069 20359640 ~ 20365532 (+) True twist2
LOC110502066 mRNA downstream 659353 20943924 ~ 20945171 (+) True LOC110502066
XM_021579264.2 mRNA downstream 1343973 21628544 ~ 21642681 (+) False LOC110501589
XM_021579262.2 mRNA downstream 1343980 21628551 ~ 21667403 (+) False LOC110501589
TU2044933 other upstream 1327 20281013 ~ 20281854 (+) False asb1
TU2044524 other upstream 621255 19661109 ~ 19661926 (+) True G1785947
TU2044159 other upstream 655421 19616995 ~ 19627760 (+) True LOC110501568
TU2044113 other upstream 710742 19570580 ~ 19572439 (+) False ybey
TU2043879 other upstream 1085467 19186488 ~ 19197714 (+) True LOC110501548
TU2046423 other downstream 849694 21134265 ~ 21136477 (+) True G1787719
TU2047590 other downstream 1710793 21995364 ~ 21996093 (+) True G1788811
TU2047594 other downstream 1713902 21998473 ~ 21999623 (+) True G1788815
TU2049337 other downstream 3131522 23416093 ~ 23432383 (+) True G1790442
TU2049772 other downstream 3833991 24118562 ~ 24119475 (+) True G1790805

Expression Profile