RNA id: XM_021579264.2


Basic Information

Item Value
RNA id XM_021579264.2
length 2390
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110501589
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21628544 ~ 21667403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACATCTCTGGTGGAAAATGGGCATGTTGTTTTATGCCGATTTTTGAATATTCACATATTCTGTTTCAAATTGGATGGAGACCTAGCTAATGAGAGCGAAGTCTTGCATCttgctcatctcaatatctgcggtgctgctcgtggcaactTAATTCTGCTAAATCTACCTTTAATGACAAGTTGTATTGAATGATAGTGTCCTAGGATCAGAAGGGCcaaagtagtggaatagtggtgaggttttaatggatgtagggttagttggtagggataaaaaaaaaataatttttttCCCTACCCTTTTTGTGTCACAAAGTGTGATGAACTAATTCCACACTCCAGAACGGTAGGCGGACACACAGCCCACACAGGTTGGTGACATGCACCTCTAACGTATGCTTGGGGACTGCCATAATATCATAGAACAAGAAGAAGAATTAGGAGTGTTAATGGGAGGCATTCATGTTATGAATAATCGAGAGACAGGGTGTAGTAGTGCAATTCTGCTGGGTCCCAGACCATAGCGGtgagtgtagaggtggatcaaatgaAAAGGAATATTCCTAGTGTTTGTGACACCTGCCGTTTGGTGAGATGTAGACCCGGTGGCAATAGCGCAACTGAGAATACCGTCTCTCTTGTTGAGCTTTGACAGAGAGTTTTTACCCGATAAAGTCAGGTTAGGCTATATTTTCTATTCTGTCAGGTCCTATGTTCCGAACTGGCTACGGTGCATTAGGTTCCCACGATGTGAGAAATGTGCAGGAGGGCATAGTTAGAGGAACATTACAGTTGGAATGAGAAAACACGTGTGTCAACTGTTGGCGTGCCCATGAAGCTGTGGATCCAAAGTACCCtgtgagagagacaggttgagatTACCAGAGTTTGAGAGGGTACGTTTCCTATGttgaggcagtgaagagagtagaggaCTGAAATGTGACCGAAATGTGCAATTCGCACTCTGACCTGCGAAAGACAGCAATATGCAACACAGCGTCTAGTCTGCCGGAAAGCCACAAGAATAATTTCGCCAGTTATAAACTGTATATCACAAGTCTCAAAGGAGTCTAAAAACTGGACATTATATTGTGGCTGCTGCAGAAACGTTTTTGGGATTTAAGGATTTTACATTTTGAAGACCGGAAAAACTGCACTCCCAGGTTCCCCTTGAGCCTGTGTAGGTATCcgatctgtttttttatttttttattaacagAAGGGGAATCCTGTTTCCATCCCGCATAGTAGATGGCGGGATGCACATGACATTCTGTGATCGCCAATAATATACcatagaagaagagaaggagcgTTCATGTTTACATCCAAACCAGTTTAGATATTTGTGTTATCATCGCATACTGTACGTTTATTATTGATGATCCAGCAGTTGTATTTTTCTGCAAATGCGAAGAAGTAACGACCACGTCAAAAAGAACGAAGCCTACTTGCCATCTAACGTTTCAGATTCCTGCCTGACTGAGGAGAGTCAGAACGTCCAAAACGCTGAAGAATCCTGTATTAGGATTTCCAGTGTCCAGATGGTGTGGGTGTTCCTCATGAACCGCATGGGGTCTCAGGGCAGCACAGTGGCCCAGCGGAGACGCATGGCCCTGGGGGTGGTCATCCTCCTGCTGGTGGACATCATCTGGGTTGTCTCCTCTGAGCTCACCTCATACATATTCAAGCGGCAGGAGTATAACAAGCCCTTCTTCAGCACGTTCACCAAGACCTCCATGTTTGTGCTGTACCTGCTGGGGTTCCTGCTGTGGCGGCCATGGAGGCAGCAGTGCACGGGCAGTCTCCGGGGACGACACGCAGCCTTTTTTGCTGATGCCGAGGCCTACTTTACCCCCTGTATCAATGACACCAGTTTGAATGACCATACGCTAAGTGAACCCTTGTATGTTCCAGTGAAGTTTCAGGATCTTCCGGCTGAACAGACAAACTGTGCCATTGGAGATTGTGATTCCACCTCTAAAAAGCAACGGGTGCGCTTCAGCAACATCATGGAGGTGCGCCAGCTCCCGTCCACACAGGCCCTGGAGGCCAAGCTATCGCGCATGTCCTACCCCGCCGCCAAGGACCACGAGTCCATGCTCCGCACAGTGGGAAAGCTCACCGTCACCGACGTGGCCAAGATCAGCTTCTTCTTCTGCTTTGTGTGGTTCCTAGCAAACCTCTCCTACCAAGAGGCCCTGTCGGACACGCAGGTTGCCATAGTGAACATTCTGTCCTCCACTTCAGGTTAAACTCTACAGGACGTGTTGTGAACAGTCTCGCTGTTATTGTCCTCCTCACCAGGTCTCTTCACCCTCATCCTGGCGGCCATATTTCCCAGTAATAGCAGCGACCGCTTTACTCTGTCCAAGCTCTTAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047023 lncRNA upstream 37561 21572582 ~ 21590983 (+) True G1788294
TU2047066 lncRNA upstream 59637 21565065 ~ 21568907 (+) True G1788331
TU2046635 lncRNA upstream 138335 21489955 ~ 21490209 (+) True G1787919
TU2046634 lncRNA upstream 138925 21489352 ~ 21489619 (+) True G1787918
TU2046632 lncRNA upstream 141252 21487057 ~ 21487292 (+) True G1787916
TU2047178 lncRNA downstream 98321 21741002 ~ 21741497 (+) False G1788441
TU2047179 lncRNA downstream 98358 21741039 ~ 21741497 (+) True G1788441
TU2047180 lncRNA downstream 98856 21741537 ~ 21746817 (+) False G1788442
TU2047181 lncRNA downstream 98856 21741537 ~ 21746817 (+) True G1788442
TU2047196 lncRNA downstream 118535 21761216 ~ 21761864 (+) False G1788457
LOC110502066 mRNA upstream 683373 20943924 ~ 20945171 (+) True LOC110502066
XM_021579254.2 mRNA upstream 1263012 20359640 ~ 20365532 (+) True twist2
XM_021579956.2 mRNA upstream 1284588 20338128 ~ 20343956 (+) True LOC110502064
XM_036958948.1 mRNA upstream 1346692 20269646 ~ 20281852 (+) False asb1
XM_036958947.1 mRNA upstream 1351678 20269646 ~ 20276866 (+) False asb1
XM_021579265.2 mRNA downstream 26835 21669516 ~ 21701293 (+) True LOC110501590
XM_021579273.2 mRNA downstream 286681 21929362 ~ 21934705 (+) False c22h2orf69
XM_021579272.2 mRNA downstream 286722 21929403 ~ 21934705 (+) True c22h2orf69
XR_002470226.2 mRNA downstream 392691 22035372 ~ 22067156 (+) False esyt3
XM_036958959.1 mRNA downstream 392692 22035373 ~ 22076238 (+) False esyt3
TU2046423 other upstream 492067 21134265 ~ 21136477 (+) True G1787719
TU2044940 other upstream 1343973 20283181 ~ 20284571 (+) True G1786330
TU2044933 other upstream 1346690 20281013 ~ 20281854 (+) False asb1
TU2044524 other upstream 1966618 19661109 ~ 19661926 (+) True G1785947
TU2044159 other upstream 2000784 19616995 ~ 19627760 (+) True LOC110501568
TU2047590 other downstream 352683 21995364 ~ 21996093 (+) True G1788811
TU2047594 other downstream 355792 21998473 ~ 21999623 (+) True G1788815
TU2049337 other downstream 1773412 23416093 ~ 23432383 (+) True G1790442
TU2049772 other downstream 2475881 24118562 ~ 24119475 (+) True G1790805
TU2050548 other downstream 2751387 24394068 ~ 24410713 (+) True LOC110501605

Expression Profile