RNA id: TU2057094


Basic Information

Item Value
RNA id TU2057094
length 280
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1797528
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29639984 ~ 29640263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATttagctcctctctctcatatccaaactacatacacacacacccacaggcaaacatgcatacacacatacacacacattgctGCTCACCCAGTGCTCACCCAGTCTACAGTGGGAGGTTTTAGCATTATAAAGTGTGACGCCAGCCCTTCCTGTGCTCTGGCCTGATTCATCTCTGTTCAATAACAACATGGagcagctccctctctctctctgtctgctgttaCTTGTGTCCCAACAGCAAACAGCTCAGTATCAccctgccagtgtgtgtgtgagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057064 lncRNA upstream 18481 29621005 ~ 29621503 (+) True LOC118943646
TU2057062 lncRNA upstream 18995 29620635 ~ 29620989 (+) True G1797499
TU2057044 lncRNA upstream 37988 29601734 ~ 29601996 (+) True G1797481
TU2057029 lncRNA upstream 47379 29592343 ~ 29592605 (+) True G1797466
TU2057028 lncRNA upstream 47854 29591906 ~ 29592130 (+) True G1797465
TU2057096 lncRNA downstream 764 29641027 ~ 29641228 (+) True G1797530
TU2057097 lncRNA downstream 1052 29641315 ~ 29641538 (+) True G1797531
TU2057125 lncRNA downstream 24657 29664920 ~ 29665320 (+) True G1797559
TU2057143 lncRNA downstream 37869 29678132 ~ 29678419 (+) True G1797575
TU2057147 lncRNA downstream 39614 29679877 ~ 29680180 (+) True G1797579
XR_005038972.1 mRNA upstream 17910 29621112 ~ 29622074 (+) False LOC118943646
XM_036959066.1 mRNA upstream 50901 29500150 ~ 29589083 (+) False LOC110501709
XM_036959067.1 mRNA upstream 50901 29500150 ~ 29589083 (+) False LOC110501709
XM_036959068.1 mRNA upstream 50901 29500150 ~ 29589083 (+) False LOC110501709
XM_036959069.1 mRNA upstream 50901 29501834 ~ 29589083 (+) True LOC110501709
XM_021579458.2 mRNA downstream 218492 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 253863 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 272018 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 277510 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 277521 29917784 ~ 29933035 (+) False LOC118943632
TU2055989 other upstream 629711 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 629711 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 629711 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 655758 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 1547868 28091565 ~ 28092116 (+) True G1795550
TU2057150 other downstream 103929 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 283294 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 860393 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1248398 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1248398 30888661 ~ 30891067 (+) False G1798397

Expression Profile