RNA id: TU2057147


Basic Information

Item Value
RNA id TU2057147
length 304
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1797579
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29679877 ~ 29680180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtattttttgtgaagaatcaacaacaagtgtgacacaatcatgaagtggaatgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057143 lncRNA upstream 1458 29678132 ~ 29678419 (+) True G1797575
TU2057125 lncRNA upstream 14557 29664920 ~ 29665320 (+) True G1797559
TU2057097 lncRNA upstream 38339 29641315 ~ 29641538 (+) True G1797531
TU2057096 lncRNA upstream 38649 29641027 ~ 29641228 (+) True G1797530
TU2057094 lncRNA upstream 39614 29639984 ~ 29640263 (+) True G1797528
TU2057158 lncRNA downstream 5551 29685731 ~ 29685986 (+) True G1797590
TU2057194 lncRNA downstream 55516 29735696 ~ 29736011 (+) True G1797626
TU2057199 lncRNA downstream 62301 29742481 ~ 29742773 (+) True G1797631
TU2057200 lncRNA downstream 63141 29743321 ~ 29743905 (+) True G1797632
TU2057148 lncRNA downstream 65243 29745423 ~ 29746868 (+) True G1797580
XR_005038972.1 mRNA upstream 57803 29621112 ~ 29622074 (+) False LOC118943646
XM_036959066.1 mRNA upstream 90794 29500150 ~ 29589083 (+) False LOC110501709
XM_021579458.2 mRNA downstream 178575 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 213946 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 232101 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 237593 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 237604 29917784 ~ 29933035 (+) False LOC118943632
TU2055989 other upstream 669604 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 669604 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 669604 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 695651 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 1587761 28091565 ~ 28092116 (+) True G1795550
TU2057150 other downstream 64012 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 243377 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 820476 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1208481 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1208481 30888661 ~ 30891067 (+) False G1798397

Expression Profile