RNA id: TU2080462


Basic Information

Item Value
RNA id TU2080462
length 454
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G1818252
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48926194 ~ 48931697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtattgtagagtagtggtctgagggaacacactgtggtagtagagtagtggtctgaggaaacacacttaatgtattgtagagtagtggtctgaggtaacacacttaatgtattgtagatatgtggtagtagagtagtggtctgagagaacacacttaatgtgttgtagagtagtggtctgagggaacacacttaatgtgttgtagagtagtggtctgagggaacacacttaatgtgttgtagagtagtggtctgagggaacacacttaatgtgttgtagatatgtggtagtagagtagtggtctgagggaacacacttaatgtattgtagatatgtggtagtagagtagtggtctgagggaacacacttaatgtgttgtagatatgtggtagtagagtagtggtctgaggtaacacacttaatgtattgtagatatgtggtagtagagtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2080418 lncRNA downstream 31278 48894477 ~ 48894916 (-) True G1818232
TU2080413 lncRNA downstream 36943 48889003 ~ 48889251 (-) True G1818227
TU2080404 lncRNA downstream 43008 48882960 ~ 48883186 (-) True G1818218
TU2080383 lncRNA downstream 73384 48852570 ~ 48852810 (-) True G1818197
TU2080296 lncRNA downstream 144688 48781229 ~ 48781506 (-) True G1818144
TU2080466 lncRNA upstream 2444 48934141 ~ 48935017 (-) True G1818255
TU2080471 lncRNA upstream 20107 48951804 ~ 48952171 (-) True G1818259
TU2080482 lncRNA upstream 28216 48959913 ~ 48960113 (-) True G1818270
TU2080514 lncRNA upstream 54574 48986271 ~ 48987447 (-) True G1818292
TU2080553 lncRNA upstream 85372 49017069 ~ 49018034 (-) False G1818322
XM_021580043.2 mRNA downstream 280273 48505445 ~ 48645921 (-) False LOC110502188
XM_036959466.1 mRNA downstream 706152 48139761 ~ 48220042 (-) False LOC110501956
XM_036959601.1 mRNA upstream 30515 48962212 ~ 48964633 (-) True LOC118943644
XM_036959089.1 mRNA upstream 538405 49470102 ~ 49480960 (-) True LOC118943599
XR_005038852.1 mRNA upstream 1191191 50122888 ~ 50243942 (-) False prkag3b
XM_036959479.1 mRNA upstream 1191191 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA upstream 1191191 50122888 ~ 50243944 (-) False prkag3b
TU2080196 other downstream 298348 48627364 ~ 48627846 (-) True G1818059
TU2080079 other downstream 456159 48469598 ~ 48470035 (-) True G1817968
TU2079931 other downstream 466154 48459026 ~ 48460040 (-) True G1817836
TU2079734 other downstream 634698 48268787 ~ 48291496 (-) True G1817668
TU2079567 other downstream 862550 48062049 ~ 48063644 (-) True LOC110501953
TU2080631 other upstream 193817 49125514 ~ 49126117 (-) True G1818393
TU2080662 other upstream 234054 49165751 ~ 49166367 (-) True G1818417
TU2081122 other upstream 785935 49717632 ~ 49719378 (-) True G1818802
TU2081603 other upstream 1277777 50209474 ~ 50213886 (-) True G1819189
TU2081760 other upstream 1370104 50301801 ~ 50305038 (-) True G1819250

Expression Profile