RNA id: TU2080629


Basic Information

Item Value
RNA id TU2080629
length 541
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1818391
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 49104823 ~ 49105363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtaaggagggggaccgtggctggactagacaccacagtaaggtccagggctggactagacaccacagtaataccagggctggactagacaccacagtaaggaccaggactggactagacaccacagtaaggaccagggctggactagacaccacagtaaggaccagggctggtctagacaccacagtaaggaccagggctggactagacaccacagtaaggaccagggctggactagacaccacagtaaggaccagggctggactagacaccacagtaaggaccagggctggactagacaccatagtaaggaagggggaccagggcATCCCTCTTGTGTGTTGTTACTGTAGCCTGGGGATACACATCAGACCTCTCTATCaatcctctatccctcctttcACTCTATCGCTCCCTatatccttccctctatctctcccttctctaTAGATATAGAGACCCTcttcaacatactgtatgtgtcaaTGAATTTGCATagactagaacagtctgcagcacctggcctcaccctagttgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2080606 lncRNA downstream 2401 49046582 ~ 49102422 (-) True G1818369
TU2080561 lncRNA downstream 83617 49020386 ~ 49021206 (-) True G1818326
TU2080560 lncRNA downstream 84645 49019943 ~ 49020178 (-) True G1818325
TU2080556 lncRNA downstream 85886 49017439 ~ 49018937 (-) False G1818322
TU2080554 lncRNA downstream 85886 49017603 ~ 49018937 (-) True G1818322
TU2080634 lncRNA upstream 37954 49143317 ~ 49143584 (-) True G1818396
TU2080637 lncRNA upstream 39191 49144554 ~ 49145531 (-) True G1818399
TU2080660 lncRNA upstream 59207 49164570 ~ 49165171 (-) True G1818415
TU2080667 lncRNA upstream 70893 49176256 ~ 49176594 (-) True G1818422
TU2080686 lncRNA upstream 91197 49196560 ~ 49197460 (-) False G1818436
XM_036959601.1 mRNA downstream 140190 48962212 ~ 48964633 (-) True LOC118943644
XM_021580043.2 mRNA downstream 458902 48505445 ~ 48645921 (-) False LOC110502188
XM_036959467.1 mRNA downstream 884781 48139761 ~ 48220042 (-) False LOC110501956
XM_036959089.1 mRNA upstream 364739 49470102 ~ 49480960 (-) True LOC118943599
XR_005038852.1 mRNA upstream 1017525 50122888 ~ 50243942 (-) False prkag3b
XM_036959479.1 mRNA upstream 1017525 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA upstream 1017525 50122888 ~ 50243944 (-) False prkag3b
XM_036959481.1 mRNA upstream 1017525 50122888 ~ 50243945 (-) True prkag3b
TU2080196 other downstream 476977 48627364 ~ 48627846 (-) True G1818059
TU2080079 other downstream 634788 48469598 ~ 48470035 (-) True G1817968
TU2079931 other downstream 644783 48459026 ~ 48460040 (-) True G1817836
TU2079734 other downstream 813327 48268787 ~ 48291496 (-) True G1817668
TU2079567 other downstream 1041179 48062049 ~ 48063644 (-) True LOC110501953
TU2080631 other upstream 20151 49125514 ~ 49126117 (-) True G1818393
TU2080662 other upstream 60388 49165751 ~ 49166367 (-) True G1818417
TU2081122 other upstream 612269 49717632 ~ 49719378 (-) True G1818802
TU2081603 other upstream 1104111 50209474 ~ 50213886 (-) True G1819189
TU2081760 other upstream 1196438 50301801 ~ 50305038 (-) True G1819250

Expression Profile