RNA id: TU2080637


Basic Information

Item Value
RNA id TU2080637
length 941
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1818399
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 49144554 ~ 49145531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaaaatAACGGAggaattttggatataaaaataatctcagTTATGGTCCTATGAACCATGTCAGTTATGGTCCTATGAACCATGTCAGTTATGGTCCTGTGAACCATGTCACTAATGGTCCTGTGGTGAAGCATAACCACTAAGTCTACAGTTAACCACTAGTCTACAGTTAACCTCTAGTCTACAGTTAACCACTAGTCTACAGTTAACCTCTAGTCTACAGTTAACCACTAGTCTACAGTTAACCACTAGTCTACAGTTAACCACTAGTCTACAGTTAACCACTAAGTCTACAGTTAACCACTAGTCTACAGTTAACCACTAATCTACAGTTAACCACTAGTCTACAGTTAACCAATGGTTATCAGTTAACCTCTAGTCTACAGTTAACCTCTAGTCTACAGTTAACCACTAGTCTACAGTTAACCACTAGTCTACAGTTAACCACTAGTCTACAGTTAACCTCTAGTCTACAGTTAACCACTAGTCTACagctaaccactagtctacagtTAACCACTAGTCTACAGTTAACCTCTAGTCTACAGTTAACCACTAGTCTACAGTTAACCAATGGTTATCAGTTAACCTCTAGTCTACagctaaccactagtctacagcTAACCACTAGTCTATAGTTAACCACTAGTCTACAGTTAACCACTAGTCTACAGTTAACCTCTAGTCTACAGTTAACCACTAGTCTACagctaaccactagtctacagctaaccactagtctacagcTAACCACTAGTCTATAGTTAACCACTAGTTTTCAGTTAACCACTAGTCTACAGCTAACCTCTAGTCTACagctaaccactagtctacagctaaccactagtctacagcTAACCACTAGTCTATAGTTAACCACTAGTCTACAGTTAACCACTAGTTATCAGTTAACCACTAGTCTATAGTTAACCACTAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2080634 lncRNA downstream 970 49143317 ~ 49143584 (-) True G1818396
TU2080629 lncRNA downstream 39191 49104823 ~ 49105363 (-) True G1818391
TU2080606 lncRNA downstream 42132 49046582 ~ 49102422 (-) True G1818369
TU2080561 lncRNA downstream 123348 49020386 ~ 49021206 (-) True G1818326
TU2080560 lncRNA downstream 124376 49019943 ~ 49020178 (-) True G1818325
TU2080660 lncRNA upstream 19039 49164570 ~ 49165171 (-) True G1818415
TU2080667 lncRNA upstream 30725 49176256 ~ 49176594 (-) True G1818422
TU2080686 lncRNA upstream 51029 49196560 ~ 49197460 (-) False G1818436
TU2080687 lncRNA upstream 51029 49196560 ~ 49197782 (-) True G1818436
TU2080697 lncRNA upstream 68143 49213674 ~ 49213886 (-) True G1818446
XM_036959601.1 mRNA downstream 179921 48962212 ~ 48964633 (-) True LOC118943644
XM_021580043.2 mRNA downstream 498633 48505445 ~ 48645921 (-) False LOC110502188
XM_036959467.1 mRNA downstream 924512 48139761 ~ 48220042 (-) False LOC110501956
XM_036959089.1 mRNA upstream 324571 49470102 ~ 49480960 (-) True LOC118943599
XR_005038852.1 mRNA upstream 977357 50122888 ~ 50243942 (-) False prkag3b
XM_036959479.1 mRNA upstream 977357 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA upstream 977357 50122888 ~ 50243944 (-) False prkag3b
XM_036959481.1 mRNA upstream 977357 50122888 ~ 50243945 (-) True prkag3b
TU2080631 other downstream 18437 49125514 ~ 49126117 (-) True G1818393
TU2080196 other downstream 516708 48627364 ~ 48627846 (-) True G1818059
TU2080079 other downstream 674519 48469598 ~ 48470035 (-) True G1817968
TU2079931 other downstream 684514 48459026 ~ 48460040 (-) True G1817836
TU2079734 other downstream 853058 48268787 ~ 48291496 (-) True G1817668
TU2080662 other upstream 20220 49165751 ~ 49166367 (-) True G1818417
TU2081122 other upstream 572101 49717632 ~ 49719378 (-) True G1818802
TU2081603 other upstream 1063943 50209474 ~ 50213886 (-) True G1819189
TU2081760 other upstream 1156270 50301801 ~ 50305038 (-) True G1819250
TU2082589 other upstream 1317354 50462885 ~ 50463762 (-) True si:ch211-67e16.4

Expression Profile