RNA id: TCONS_00051923


Basic Information

Item Value
RNA id TCONS_00051923
length 1627
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_026658
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40153819 ~ 40162867 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGGTGGTGACGTCACCAGCAGTCCATGCTGCATTTTTCGGGCTGCTCAAAACTGTAATTATCACCGCATTCCCTCATTAAAACACACGAGTGACAATGTACAATACTTTCCGGAGTGCTGagtttacataaataataatttgctATGATATTTGTATGACAGCGCCGTCTGCCGTAGTGTTGGATAAGTTTTTAAGTGTCTGCTAGCTTAGCTTACTACTGACAACGCAGTCCGAGAGCGGATGGTCTGTACAGTATGACTGACGAGCCTCTGTATCTTCCACAGGCTTCATATTAGGATATAAACACCACACTTCACCAACAATGGGGATTCTGGAGAAGATCGcggagatagagagagaaatcTCCAGAACACAGAAGAATAAAGCAACTGAGTACCATCTGGGTTTATTGAAAGCCAAGTTAGCCAAATACAGAGCTCAACTTCTGGAGCCCTCAAAGTCAGCGGGGGCCAAAGGTGAAGGCTTCGATGTGATGAAATCTGGAGATGCCAGAGTGGCACTGATTGGATTCCCCTCGGTTGGCAAGTCTACATTTCTCAGTTTAATGACAAAAACAGAAAGTGAAGCAGCTTCTTATGAATTCACTACCTTGACCTGCATCCCTGGTGTCATTGAGTACAAAGGTGCCAACATACAGCTGCTGGACTTGCCTGGTATTATTGAAGGGGCCGCACAAGGTAAGGGCAGAGGTAGACAGGTCATCGCTGTGGCCAGAACTGCAGATGTGGTCATTATGATGCTGGATGCGACTAAAGGAGACGTTCAGAGGGAACTTCTGGAAAAAGAGCTTGAATCTGTTGGCATCAGACTCAACAGACCCAAACCAAATATCTATTTTAAGccCAAAAAAGGTGGTGGCCTGTCCTACAACTCAACAGTTCCTCTTACACAGTGCTCAGAGAAGCTCGTTCAGCTCATTCTTCATGAGTACAAAATCTTCAACGCTGAGGTCTTGTTCAGAGAGGACTGCTCTCCAGATGATTTCATCGACGTCATCGTGGGCAACCGAGTGTACATGCCTTGTTTATACGTGTACAACAAGGTGGACCAGATTTCTATTGAGGAAGTGGATCGTCTTGCTCATCGACCAAACAGTGTAGTTATCAGCTGTGGCATGAAACTCAATCTAGATTACCTCCTGGAGCAGTTATGGGAATATCTGGCTCTCATCTGCATATATACCAAGAAGAGAGGAGAACGACCAGATTTCGGTGACCCTATAATCATGAGACGAGCAGCATCAGTTAAACATGTGTGTCACAGAATCCACCGGACGTTAGCTAGCCAGTTCAAGTATGCACTTGTCTGGGGAACAAGCACAAAGTACAGTCCTCAGAGAGTAGGACTGACCCACATCATGGAGCACGAGGATGTCATTCAAATTGTGAAGAAATAAAATCTCGTCTCCAGATCCACTACAGTATCAACAGAACATTGGATACGTTTTCTGTTAACAGCTGCAATGTTTCAAGCAGCTTCACCTGTGATATCGACAATTGAAAAGTTAGTTTATGAAAATCACCTGACAAAACCCATTATAATAAATAACTTTCAGATTCTTGTTTGCCTttcataagtaaataaaaagtgttttattaaataa

Function

GO:

id name namespace
GO:0002181 cytoplasmic translation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-29 Predicted to enable GTP binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be active in cytoplasm. Orthologous to human DRG2 (developmentally regulated GTP binding protein 2).

Ensembl:

ensembl_id ENSDART00000129664

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051913 lncRNA downstream 202714 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 458183 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 590940 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 699338 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 1040694 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00053081 lncRNA upstream 17293 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051928 lncRNA upstream 88573 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 233220 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 233220 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 240213 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051919 mRNA downstream 17498 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051920 mRNA downstream 85891 40062024 ~ 40068350 (-) True XLOC_026656
TCONS_00051917 mRNA downstream 99492 40000013 ~ 40054749 (-) False XLOC_026655
TCONS_00051918 mRNA downstream 99503 40000312 ~ 40054738 (-) True XLOC_026655
TCONS_00051916 mRNA downstream 99626 39975249 ~ 40054615 (-) False XLOC_026655
TCONS_00051925 mRNA upstream 22410 40185253 ~ 40202607 (-) True XLOC_026660
TCONS_00051926 mRNA upstream 43188 40206031 ~ 40232615 (-) True XLOC_026661
TCONS_00051927 mRNA upstream 72445 40235288 ~ 40254634 (-) False XLOC_026662
TCONS_00051929 mRNA upstream 98086 40260929 ~ 40276071 (-) False XLOC_026663
TCONS_00051930 mRNA upstream 105481 40268324 ~ 40275096 (-) False XLOC_026663
TCONS_00051921 other downstream 65440 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 196767 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 504679 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 894564 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051892 other downstream 1235524 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051938 other upstream 364036 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 364039 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 1149179 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 2703240 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3918780 44081623 ~ 44094226 (-) False XLOC_026707

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_04024795_04028000.mRNA True 787 mRNA 0.42 6 CI01000046 4024551 ~ 4028000 (+)
bowfin (Amia calva) AMCG00018507 True 2966 mRNA 0.40 13 CM030135.1 12934596 ~ 12943295 (+)