RNA id: TCONS_00052054


Basic Information

Item Value
RNA id TCONS_00052054
length 1358
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_026730
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47114328 ~ 47128096 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCACACATGAGAGGGAACTAGGTAGTATGGCATCTGTAAAAGCTGTATCTTCGGCTGCCCCCCTTGCACTTCGTATCGTGGCGGAGTGTCCGGTGAGCAAAGCGAGAGCCTGCAGTCTGACTCTCCCGCACTGCGCGGTCAACACGCCGGTGTTTATGCCCGTAGGCACTCAGGGCACCATGAAAGGCATCACTGCTGACCAGCTGGAGGATCTGGACTGTCAGATCTGCCTGGGAAACACCTATCATCTGGGCATGAGACCGGGTCCTGATTTAATAGAGAAAGCCAACGGACTGCATGGATTTATGAAATGGAGAAGGAATCTCTTAACAGACAGTGGCGGTTTCCAGATGGTGTCTCTAGTGGAGTTGTCGGAAGTGACGGAGGAGGGCGTCACGTTCCGTTCCCCTTACGATGGAAAGGAAATTCTGCTCACCCCTGAGCAATCCATCGCCATACAAAACAGCCTGGGCTCAGACATCATGATGCAGCTAGATGACGTGGTCAGCAGTACAGTTAAAGGGCCGCGGGTGGAGGAGGCCATGCATCGCTCTGTGCGCTGGCTGGACCGCTGCATCGCAGCAAACAAGAACCCAGATCGACAGAACCTGTTCGCCATTATTCAAGGAGGACTTGATGCTGAACTACGCAAGGCCTGTTTAAAAGAAATGACAAAGCGTGACGTGCCGGGCTTCGCCATCGGTGGATTGAGCGGCGGAGAGGAAAAGGACGATTTCTGGAAGATGGTGACTCTCAGCACAGACCATCTCCCAAGAGAAAAACCCCGCTACCTCATGGGAGTCGGCTACGCTGTGGACCTAGTAGTCTGTGTTGCTCTGGGCTGTGATATGTTTGACTGCGTTTTCCCAACTCGAACAGCAAGATTTGGCTCTGCTTTAGTGCCCTGGGGATCTTTGCAGCTCAAACAGAAACAATACGCCAAAGACTTTCAGCCCATTGATCCTGACTGCCAGTGTCCCACCTGCAGGAGACACAGTCGAGCTTACCTTCATGCCCTGTTCAAGAGTGACACTGCAGCCATGCATCACATCACCATCCACAACATCTCCTATCAGCTGAGCCTCATGCGTTCAGTGCGCCAGAGCATCATTGATCAGAGGTTTCCCGAGTTTGTGAAGGAGTTCATGAAGAGGATGTTCCCGTCCAGCTCGCAGTACCCCAGCTGGGCTGTAGAGGCTCTGCAGTCAGTCAACATCTGCCTGAGCTGAGAGGAACACCTGGAGAGATGAGGGTTAACAGAAGAATtgtgcattattaaaatgcatttttatactaatattttaaacatgtagTATGTGAAATACCCgttttgtaaataaaatcttattttcatttt

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0101030 tRNA-guanine transglycosylation biological_process
GO:0008033 tRNA processing biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016763 transferase activity, transferring pentosyl groups molecular_function
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-1625 Predicted to enable protein heterodimerization activity; protein homodimerization activity; and queuine tRNA-ribosyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA-guanine transglycosylation. Predicted to be located in mitochondrial outer membrane. Orthologous to human QTRT1 (queuine tRNA-ribosyltransferase catalytic subunit 1).

Ensembl:

ensembl_id ENSDART00000063287

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052045 lncRNA downstream 296472 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00052040 lncRNA downstream 351622 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00053103 lncRNA downstream 651072 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00052035 lncRNA downstream 888483 46224848 ~ 46225845 (-) False XLOC_026723
TCONS_00053104 lncRNA upstream 1936 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 66642 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053105 lncRNA upstream 699106 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00053106 lncRNA upstream 1195444 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00053108 lncRNA upstream 1333401 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00052049 mRNA downstream 9061 46919522 ~ 47105267 (-) False XLOC_026729
TCONS_00052048 mRNA downstream 9061 46919522 ~ 47105267 (-) False XLOC_026729
TCONS_00052047 mRNA downstream 9061 46919522 ~ 47105267 (-) False XLOC_026729
TCONS_00052051 mRNA downstream 9061 46920637 ~ 47105267 (-) False XLOC_026729
TCONS_00052053 mRNA downstream 9061 47005704 ~ 47105267 (-) True XLOC_026729
TCONS_00052056 mRNA upstream 94000 47222096 ~ 47235997 (-) True XLOC_026733
TCONS_00052057 mRNA upstream 153140 47281236 ~ 47294365 (-) True XLOC_026734
TCONS_00052059 mRNA upstream 370337 47498433 ~ 47876427 (-) False XLOC_026735
TCONS_00052058 mRNA upstream 370337 47498433 ~ 47876427 (-) True XLOC_026735
TCONS_00052060 mRNA upstream 1125106 48253202 ~ 48259289 (-) True XLOC_026737
TCONS_00052007 other downstream 3020102 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 4248128 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 5802185 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 6584549 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 6584550 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 67041 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 1949666 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 2687101 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 2975975 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 4420037 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000033_00415100_00423953.mRNA True 1402 mRNA 0.51 9 CI01000033 414952 ~ 423953 (-)