RNA id: TCONS_00053103


Basic Information

Item Value
RNA id TCONS_00053103
length 352
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_026726
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46462585 ~ 46463256 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGATTTGTGCTTGATGACAAACTGTTTGCTCTTTTTCCCAAGTATATTTGATGCAGTGCATGTATAAACCCCTGGGCTCAAAGATGCGTCTTTCAAAACGGGCTGATCATCAGCCTTCTCCTGAAGGTTTGGGGACGTCCAGATGTACACAGGCAGTGGGTTTCCCTCTGCTGTACAATCCAGCACCACTTCACTACCCTCACTGACCTCCAGCTGCTCTTCCTTTGGACTGCGGAAGTCAGGTGGGTACTGAACAGGCGCGACGTTGTGCACCTCACATTGGAGCTGGTACTCTCGTCCCTCCACCACAGGACTGCTGTGATTCACTAAACTTATGGACACGCTGTCTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052034 lncRNA downstream 235575 46224721 ~ 46227010 (-) False XLOC_026723
TCONS_00052032 lncRNA downstream 235577 46224602 ~ 46227008 (-) False XLOC_026723
TCONS_00052033 lncRNA downstream 235579 46224681 ~ 46227006 (-) False XLOC_026723
TCONS_00052030 lncRNA downstream 235587 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052029 lncRNA downstream 235587 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052040 lncRNA upstream 294355 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00052045 lncRNA upstream 348095 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00053104 lncRNA upstream 666776 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 731482 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053105 lncRNA upstream 1363946 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00052038 mRNA downstream 52198 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052039 mRNA downstream 58807 46387865 ~ 46403778 (-) True XLOC_026725
TCONS_00052037 mRNA downstream 82685 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052027 mRNA downstream 347353 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052025 mRNA downstream 614328 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052041 mRNA upstream 336934 46800190 ~ 46818001 (-) False XLOC_026728
TCONS_00052042 mRNA upstream 338016 46801272 ~ 46817838 (-) False XLOC_026728
TCONS_00052043 mRNA upstream 339742 46802998 ~ 46817499 (-) False XLOC_026728
TCONS_00052044 mRNA upstream 340087 46803343 ~ 46811611 (-) False XLOC_026728
TCONS_00052046 mRNA upstream 456266 46919522 ~ 47036951 (-) False XLOC_026729
TCONS_00052007 other downstream 2368359 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 3596385 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 5150442 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5932806 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5932807 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 731881 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 2614506 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 3351941 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 3640815 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 5084877 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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