RNA id: TCONS_00052046


Basic Information

Item Value
RNA id TCONS_00052046
length 3423
RNA type mRNA
GC content 0.51
exon number 30
gene id XLOC_026729
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46919522 ~ 47105267 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tccgaatcctcccatttcgtggattcaatcaatccactctatggcacttccgttcccctcctcggggaacgaagggttacttctgtaacctcgaacgttctctTGCAGGTAGAGTTCTATGTGAATGAAAACACTTTCAAGGAACGCCTGAAGCTGTTCTTCATCAAAAACCAAAGATCCAGTTTGAGAGTGCGACTCTTCAACTTCTTTCTGAAGGTTCTGAGCTGCTTGCTGTACATTGTACGAGTCCTGCTGGATGACCCTCGGGAGGAAAGAGATTGCTTCTTACActctgtcactggggtagtagCTTTACAAAAAGTGCTTGTTGCATTCATCAGTTTTTCAGAGACCATGTTGCTGGTTTACCTAAGCTACAAGGGCAACGTTTGGGAACAAGTCTTGCGCATTCCCTTCATTCTGGAGATGATCAGTGCCGTCCCTTTTGTGATCACTGTGATTTTGCCCTCCCTCAGAAACTTGTTCATTCCTGTTTTCCTGAACTGCTGGCTGGCCAAACACGCTCTTGAGAACATGATTAATGACCTGCACAGAGCGATTCAGCGCACACATTCAGCCATGTTCAACCAGGTGCTCATCCTCATCAGCACCCTCCTCTGCCTCATCTTCACCTGTATTTGTGGTATTCAGCACTTGGAACGAGCCGGGAACAACCTGACACTCTTTGACTCTCTGTATTTCTGTGTTGTCACTTTCTCTACGGTGGGCTTTGGGGACGTCACACCTCAGATCTGGCCGTCCCAGTTGCTGGTGGTCATCATGATCTGTGTGGCTCTTATAGTTCTGCCAATACAGTTTGAGCAGTTGGCTTTCCTATGGATGGAGCGACAGAAGTCTGGAGGAAACTACAGCCGTTACCGTGCTCAGACTGAGAAGCATGTAGTGTTATGTGTCAGCTGTCTCAAGATAGACCTGCTCATGGACTTCCTCAACGAGTTCTTTGCTCACCCCAGACTGCAGGATTACTATGTGGTCATCTTGTGTCCTGCTGAGATGGACGTCCAGGTGCGGAGGGTTCTTCATATCCCGCTGTGGGCACAGAGGGTCATTTACCTGCAGGGGTCTGCACTCAAAGATCAGGACCTAATGAGGGCAAAAATGGATGATGCCGAAGCCTGTTTCATCCTGAGCAACCGGTTTGAAGTGGACCGATTTGCTGCTgacCATCAGACCATTCTTAGGGCCTGGGCCGTGAAAGACTTTGCTCCAAACTGCCCACTTTATGTGCAGATCCTCAAACCTGAGAATAAGTTTCACATCAAGTTCGCAGatCATGTGGTTTGTGAGGAAGAGTTTAAATATGCTATGTTGGCCCTGAACTGTGTGTGTCCTGCCACCTCTACCCTGATCACACTGTTGATTCACTCCTCTAGAGGACAGGAAGGTGGTGCCAGCTCAGTCGATCAATGGCAGCGCACCTACCGGCGCTGCGCAGCCAATGAGGTGCACCACATCCGACTGGAGGAGAGCAAGTTTTTTGGAGAATATCAGGGAAAGAGTTTCACCTTTGCCTCCTTTCATGCACATAAGAAATACggtgtgtgtctgattggggtgcGCAGGATGGACACCGCCAATATCCTCCTGAACCCTGGACCTTGTCACATTATGGGAGCCTCTGACACCTGTTTCTACATCAACATCTCCAAAGAGGAAAATTCAGCATTTGTCCGTGGCCACAGAGAGCCGGTGCGAGGCCCCGGGGGTGATTCCAGGGGGGTCCCACAGACCATCTATCATGGCCTCACTCGCCTGCCAGTGCACAGCATCATAGCCAGCATGGGTTATGGGACGGTGAGCAGAAGTGGCTGCAGGACAGAAGTGAGCGTTTGTAACACGCTATCGCTGCCTGCCGTCAGTGGCTCCGGTGAGGAAAGAAGACACAGCATCGCCCCTGTCCTGGAAGTGGTGGACGGTGTACACAACTCCACGTTTGACCTGCTGGGGGACCAATCTGAGGACGAGGGAGGAGAGGAGGGCAAGGAGGAGGATGGAGGAGAGTGGGTTAAAGGCTACCCACTAAACTCTCCATACATCGGCAGCTCTCCAGCCCTCTGCCACCTTCTGCAGGAGAAAATGCCATTTTGCTGTCTGCGTCTGGATAAAGCTTGTCATCACATGCCCTATGAAGATGCTCGCTCTTATGGCTTCAAAAACAAACTGATCATCGTATCAGCGGAAAGTGCTGGAAATGGCCTTTATAACTTCATCGTCCCTCTGCGAGCATATTACCGCCCCAGGAAGGAGCTTAACCCCATTGTTTTGTTATTGGAGAACGTaCCTGAGGCAGACTTCTTGGAGGCCATCTGCTGGTTTCCTATGGTCTTTTACACAGTGGGCTCCATTGACAATCTGGATAGTCTTTTGCGTTGTGGTGTGACATTTGCTGACACCATGGTAGTTGTGGACAAAGAGAGCTCTATGATTGCAGAGGAGGACTACATGGCTGATGCCAAGACCATTGTTAATGTTCAGACACTCTTCAGGCTTTTTCCAGCTCTCAGTATTATAACCGAACTCACACATCCGGCCAACATGCGATTCATGCAGTTCAAAGTGAAAGACCACTATTCTCTAGCTCTTTCCAAACTGGAGAAGaaagagagagagaggggctcCAACCTAGTGTTCATGTTCAGATTACCGTTTGCGGCTGGAAAGGTGTTTAGTGTCAGTATGTTAGACACTCTGCTTTATCAGTCTTTTGTGAAGGACTACATGATCTCCATTACCAGACTGCTGCTAGGTCTAGACTCCATGCCTGGATCTGGTTTCCTCTGTGCTATGAAGATTACAGAGGAGGATTTGTGGATTCGTACTTATGGTCGTCTCTACCAAAAGCTGTGCTCATCGACTGGTGACATTCCCATCGGCATCTACCGCACAGAAGCACATAAACTACCCGTCTCAGAGTCTCAGGTGTCCATCACGGTGGAAGACTATGAGGATACACGCGAGCCCCGTGAGCCTCTGCTCTGCCGCTCCGGTCTTCATCGCAACTCAACGTCATCAGagccGAGGAAGAGCATGCAGTGGGCACGACGACTAAGTCGTAAGAGTGGACGAGGATCCGTGGGGAGCGCAGCTGAGCGCATCACCCAGCAGAGGCTCAGCCTGTTTCGCCGCTCCGAGAGGCAAGAGCTCAATGCTTTGGTCCGCACACGCATGAAGCACCTGGGGCTCTCACCATCTGGATTCAATGGGATGACAGACCAGGGCAACAGACTGTCCTATATTCTTATCAACCCTTCCCCTGACACACGCCTGGAGCTTCATGATGTCGTGTATCTGATCAGACCTGATCTTCTGTCACCAGTGCCTAACCAGGCCGGCAGTCGCAAACCCAGCGCAGGGCCAGCAGAAGGACACAGATTCGACACACAGGATAGCACTCACCTATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186971

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052045 lncRNA downstream 101666 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00052040 lncRNA downstream 156816 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00053103 lncRNA downstream 456266 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00052034 lncRNA downstream 692512 46224721 ~ 46227010 (-) False XLOC_026723
TCONS_00053104 lncRNA upstream 93081 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 157787 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053105 lncRNA upstream 790251 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00053106 lncRNA upstream 1286589 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00053108 lncRNA upstream 1424546 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00052041 mRNA downstream 101521 46800190 ~ 46818001 (-) False XLOC_026728
TCONS_00052042 mRNA downstream 101684 46801272 ~ 46817838 (-) False XLOC_026728
TCONS_00052043 mRNA downstream 102023 46802998 ~ 46817499 (-) False XLOC_026728
TCONS_00052044 mRNA downstream 107911 46803343 ~ 46811611 (-) False XLOC_026728
TCONS_00052038 mRNA downstream 509135 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052054 mRNA upstream 77377 47114328 ~ 47128096 (-) True XLOC_026730
TCONS_00052056 mRNA upstream 185145 47222096 ~ 47235997 (-) True XLOC_026733
TCONS_00052057 mRNA upstream 244285 47281236 ~ 47294365 (-) True XLOC_026734
TCONS_00052059 mRNA upstream 461482 47498433 ~ 47876427 (-) False XLOC_026735
TCONS_00052058 mRNA upstream 461482 47498433 ~ 47876427 (-) True XLOC_026735
TCONS_00052007 other downstream 2825296 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 4053322 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 5607379 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 6389743 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 6389744 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 158186 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 2040811 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 2778246 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 3067120 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 4511182 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00008583 True 705 mRNA 0.53 8 CM030126.1 4680530 ~ 4697781 (-)