RNA id: TCONS_00052505


Basic Information

Item Value
RNA id TCONS_00052505
length 253
lncRNA type intronic
GC content 0.42
exon number 1
gene id XLOC_026805
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53842532 ~ 53842784 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGTGGAGGGTTTTTGGTGGGTTGGGGGTCGAATGCCCTGCAATGTGGGAGAACGCACTAGGGTACCGGTGGCTGAAAAGTAGGTCAATCAAAAACCTTACTAACAACTGTGTCTATTAAATGATTGGGACAGAGAGATAGCATTTAAAGAAAGACaaaggagagagagaaatagCAGAGTCTGGGGCGCCACCATTTATGCTTGTTTTGTTTGgtctgtttaaataaaaaaataacatttcttgTCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052137 lncRNA downstream 144456 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00053142 lncRNA downstream 253355 53573131 ~ 53589177 (-) True XLOC_026802
TCONS_00052129 lncRNA downstream 377925 53461700 ~ 53464607 (-) True XLOC_026798
TCONS_00053141 lncRNA downstream 389750 53449116 ~ 53452782 (-) True XLOC_026797
TCONS_00053140 lncRNA downstream 391156 53449116 ~ 53451376 (-) False XLOC_026797
TCONS_00053143 lncRNA upstream 905612 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00053144 lncRNA upstream 948769 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053145 lncRNA upstream 1030617 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00052151 lncRNA upstream 1260661 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA upstream 1260663 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00052135 mRNA downstream 120350 53687645 ~ 53722182 (-) False XLOC_026803
TCONS_00052132 mRNA downstream 282951 53526025 ~ 53559581 (-) False XLOC_026801
TCONS_00052133 mRNA downstream 283124 53529714 ~ 53559408 (-) False XLOC_026801
TCONS_00052134 mRNA downstream 309404 53529716 ~ 53533128 (-) True XLOC_026801
TCONS_00052131 mRNA downstream 333952 53491105 ~ 53508580 (-) True XLOC_026800
TCONS_00052138 mRNA upstream 588309 54431093 ~ 54500354 (-) True XLOC_026806
TCONS_00052139 mRNA upstream 659566 54502350 ~ 54524194 (-) False XLOC_026807
TCONS_00052140 mRNA upstream 659584 54502368 ~ 54524194 (-) True XLOC_026807
TCONS_00052141 mRNA upstream 681443 54524227 ~ 54544612 (-) True XLOC_026808
TCONS_00052142 mRNA upstream 748434 54591218 ~ 54607166 (-) True XLOC_026809
TCONS_00052136 other downstream 153104 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 1934970 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 2294282 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 3724570 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 4027245 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052148 other upstream 1220483 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 1613569 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 1801425 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 2638028 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 2759116 56601900 ~ 56617041 (-) False XLOC_026836