RNA id: XM_036962934.1


Basic Information

Item Value
RNA id XM_036962934.1
length 5742
RNA type mRNA
GC content 0.50
exon number 37
gene id LOC110504274
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41781271 ~ 41937779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCGTGTTGTCAACAGGAGGGACATGAGGACCGCAGCTCGGGTCTTTTTCCAGCTCAACGCGGTGCTTGTcgttgtcagagagagagagagatctggccAGCAGAAGAAGTGTTTACACTTTCTCTGAATAGGAACATTGAATTTATATTTTGGAAGAAAGGGATTTTACACCGTAATATTGCCAAATTTAACATACGCCTTCTTTCGTATGTGTAATTTATTTATAATGGGAATAAATGGAAATGGACCAGAAAGAAGCCAGACTTGGAAGCAACACTTCTGCAGCTTTAGAGAATAAAACAAATGATCACCTCTTGAAGTAACGTTAATAACTCCTCACCGAATGATATACCGACGTGTATTTGCACAAGCCAACGCGTTTAAATGTAAAGTAGCTAGGTGTTAACTTTTCCAGCCAGTTAGACAGCTGTCATGGATATCTGTTCAAGACCGAGTGGAGAAATTCAAAGAAAAAACCCGCAGCAGGATTTCGAGCTTATTCAACGAGTTGGGAGCGGCACATATGGAGACGTATACAAGGCTCGAAACATCCAAACGGGAGAGCTTGCTGCTGTTAAGATTATTAAACTGGAGCCAGGGGATGACTTCTCCATCATCCAGCAGGAGATCTTCATGGTGAAGGAATGCATGCACCACAACATAGTGGCCTACTTCGGgagctacctctgCCGTGACAAGCTGTGGATCTGTATGGAGTACTGTGGGGGAGGATCTCTACAGGACATATATCATGTGACGGGTCCCCTATCAGAGCTGCAGATAGCCTACGTCTGCAGAGAGACCATACAGGGTTTGGGATATCTACACTCCAAGGGAAAAATGCACCGTGACATCAAGGGTGCTAATATCCTCCTAACAGACAACGGGCATGTGAAACTAGCTGATTTTGGAGTAGCAGCCAAAATAACAGCCACCATTGCCAAGAGGAAGTCCTTCATCGGGACTCCTTACTGGATGGCCCCGGAGGTAGCAGCAGTAGAGAAGAACGGAGGTTACAACCAGCTGTGTGACATCTGGGCCGTGGGCATCACCTCCATAGAACTGGCCGAGCTGCAGCCCCCTATGTTTGACCTGCACCCAATGAGGGCTTTGTTTCTCATGTCAAAGAGCAGCTTTCAGCCTCCCAAGCTAAAACACAAAACAAAGTGGACCACAGCCTTCCATAACTTTGTTAAAGTCTCGCTGACCAAGAACCCGAAGAAGAGACCGACAGCTGAGAAGCTCCTAACGCATTTGTTTGTAGGTCAGACGGGGCTGACCAGGAAAGTAGCTCTGGAGCTGCTGGAcaagaggaacaacccagacaacCACCAACACTTCTCTGAGGTGGACGACGATGACCTGGAGcctctTTCAGCAGTGAGACACATCATTCGTTCAACCAACAAACACTCCAGAGCAGAGAGAACTCGCTCAGAGATCAACTCAGCAGAAAACGGGAATGATGCATCTCCAGGAAGTCCGTGCTCGAGCCCTGGCCCCCCTAACTATCCTGCTAGTTTCCATAGCTACCCTATCTACGCTACAGAGGAGACGGACAGGGCCGAGGACAGGGGGGACCCAGTTGATAAAGTGAAGTTTGAACCTCCGCTGAGGAAGGAAACAGAGGCTCACATTGAAATGGACGTGACTAAACACAGCGACTTCCCCTCTCCCTGGAGCCCTTTCGCAGAGGGAGGCATCTCTACCAGgGGACACATGGCCCATCTGGAGGACGCCTTTGAAGACGTGGAGCTGTCGACCCTCAAGCACGGAATcccacctcctctacctccaaagCCTCATCTGAGCAGTTTGTCAGATGAGCCAGATGTGAGTGATGAGAGGTGTCTGACAGTGAGGAGATTTCCAGGCTCAGAGGACAGCCCAGGTCCAGACCTGTTCCCCCGGAGGCTGAGCACCCCAGAGCAGGGCAACAAGGCGGAGCATTCTGGTCCGGACTACCTGTCAGCCAGCGGCAGTAGCCCCAATCTGCTATCTACGTCCACAGCCTCAGACCCTGATCCCGATGACGGCGTGAACGGAGACAATCCCAGTCCTCGTCCCAGCCGACCACAGAGGACGGAGAAGAAAGACTACCTCAAACCTGCCATCAACGGCCTGCCGCCAACTCCTAAAGTCCTGATGGGGGCCTGTTTCTCCAAGGTGTTTGATGGCTGCCCACTGAACATCAACTGTGCCACGTCGTGGATACACCCTGATAccaaagaccagtaCCTTATATTTGGGACGGAGGATGGGATCTATACCCTCAACCTGAATGAGCTGCATGAAGCCACCATGGAACAGCTGTTCCCCAGGAAGTGTACCTGGCTctacatcatcaacaacaacctgATGTCTCTGTCAGAAGGGAAGACTTTCCAGCTCTACTCACACAACCTGATTGGTCTGTTTGAGCAGCTGAAGAAGCCTGGCCTGGCCTCTCAGTTCCACACACACCGCTTCCCAGACAAGATGTTAccaagGAGGTTTGCCTTGACAACGAAGATCCCTGACACAAAGGGCTGTCACAAGTGTTGCATTGTGAGGAACCCCTATACGGGCCATAAGTACCTGTGTGGAGCGCTCCAGTTTGGGATAATCCTGCTACAGTGGTATGAACCCATGCAGAGGTTCATGCTTATCAAGCACTTTGACTTCCCCCTACCCAACCCTCTGAAGGTGTTTGAGATGTTAGTGGTTCCAGAGCAGGAATACCCCATGGTGTGTATCGCTGTCAGCCAGGCCACGGAGCCAGGCCAGGTGGTTCACTTTGAGACCATCAACCTCAACTCCTGCTCTTCCTGGTTCACTGAGATGGGATCAACTGGTCGAGCAGTGGACGCCATCCATGTGACCCAGCTGGAGAGGGACACCTTGCTAGTGTGCCTGGACAAAAATCTCAAGATCGTTAACCTCCAGGGAAGACTGAAGTCCAACAAGAAGCTAGCCTCGGAGCTCAGCTTTGACTTCACCATTGGATCCGTTGtGTGCCTTCAGGACAGTGTTCTGGCCTTCTGGAAGCACGGCATGCAGGGAAAGAGCTTCAAGTCCAACGAGGTCACCCAGGAGATTTCTGATCCCAGCAGAGTCTTCCGCCTCCTAGGATCTGACAGGGTGGTGGTTCTGGAGAGCCGGCCCACTGACAACCCCACAGCCCTCAGCAACCTCTACATCCTGGCCGGACATGAAAACAGTTACTAGCCCTGAccccagccctgtccctgttactgAGAACAGTTACTAGCCCTGAccccagccctgtccctgttactgAGAACAGTTACTAGCCCTGACCCCAGCCCTGTTACTGAGAACAGTTACTAGCCTTGATCCCAGCCCTGTTACTGAGAACAGTTACTAGCCCTGACCCCAGCCCTGTCCCTGAGAACAGTTACTAGCCCTGAccccagccctgtccctgttactgAGAACAGTTACTAGCCCTGACCCCAGCCCCTGTTACTGAGAACAGTTATTAGCCCTGAccccagccctgtccctgttactgAGAACAGTTACTAGCCCTGACCCCAGCCCCTGTTACTGAGAACAGTTGCTAAAGCTGTCTGGCCCAAAGACCGGTAGCCCTGTCTGGCTCAGCCTCTCTGATCACCAATAACCCTTCACTCAGCCTCTCTGATCACCAATAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCATTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCATTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCATTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTCTGATCACCAGTAACCCTTCACTCAGCCTCTGTCCAGTGAAACAAACAacgagggttgttatagtgaactactttcgACAGCCCCGTTCACCCTCTCCAGCCCCGTTCACCTTCTCCAGCCCCGTTCACCACTGCTCTTTTCTAGCCCCATTCACCTTCTCCAGCCCCGTTCACCCACTCAGCCCCATTCATCACCGCTCTTTTCTAGCCCCGTTCACCCACTCAGCCCCATTCATCACCGCTCTTTTCTAGCCCCGTTCACCGCTGCTCTTTTCTAGCCCCATTCACCCTCTCCAGCCCTGTTCACCCACTCCAGCCCCGTTCACCACCTCTCTTTTCTAGCCCTGTTCACCCACTCCAGCCCCGTTCACCACCGCTCTTCTCCAGCCCCGTTCACCACCGCTCTTTTCTAGCCCCGTTCACCTTCTCCAGCCCCGTTCACCACCGCTCTTTTCTAGCCCCGTTCACCTTCTCCAGCCCCGTTCACCACCTCTCTTCTCCAGCCCCGTTCACCTCCTTCTCCAGCCCCGTTCACCACCTCTCCAGCCCCGTtcacctcctctcttctccagccCCGttcaccacctctctcctccagccccgTTCACCACCTCTCCAGCCCTGAGTCCTCTACTCAGAATGGGCTAAAAACTGATCGACTGGACTGGTGGAGCAGAATGTAGGCAGGAAAGGTTCAGACCAATGGACAGTCTTACTCTGGAGCCTCCACTTCTTCTCTCAACCTGTTACATATCAGCTGAAATACTGCAATATGACAAGACAATATCTAGAGGTGTTACTGAAAACGACTACTATAATAATTCAGATATTTAGGTCTGGTAGCAAATGGGAGTGTTGTATCTTTTTTGTCACAGGTCTGGTTGCCGATTAGCTCTGGTCTAGGACGATAGTGTGGCTTGCTAACTCTGTGCCTTGAACAGTTGGTTGAGTTACAGGCTCTAGTTTAACTAATTATAGAATGGTTCCCAAAGAAAAtcatttcaactttatttattaATCTCGAAGCAATATTCGGGTATGTTGGATTTACTAGCCGTGAGAGAGAGTTCAGTTTTGATGTTATTTTCAATACACTTGAGGTGTTGTCGTTTCATCCAAACGTTTTGACAGTTGGTCAATCTGCCTTGCATCgttgagttttttttaaatattttttttatttacttcaTAGACATCTGATGTcatctacgtcccaaatggaacacttccctggggctctggtcaaatccTATCTATGGTTAGGAGGTCATCACAACTAATGTCTTGGTTACAGTCAAGGGATTCCATGTCAGGAATGGCTACGGTTTCATCACCCATGAAACCCACCAGGTTATAAAGGAAATTTAACCCAAGGATGACTGCCAGATTTAAAGGTTTATAAAGGGGTTTTACATGGCATGATGTCACTGTCAGACTGATGTAAATGGCAGACACATTATAAAACCTTTTAGGGTGAAACGAGATAAAGGTTGACATTAAAGTTGAAAATAAGAGAACTTTGAAAGTGTGAACTGTCCCCTTtaagtagagagagatagggtgaACTGTCCCCtttaagtagagagagagagggtgaactgTCCCCtttaagcagagagagagagggtgaactgTCCCCtttaagcagagagagagagggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2267791 lncRNA upstream 2624 41730553 ~ 41778877 (+) True G1983612
TU2267794 lncRNA upstream 21576 41758615 ~ 41759925 (+) False G1983614
TU2267795 lncRNA upstream 21576 41758615 ~ 41759925 (+) True G1983614
TU2267823 lncRNA upstream 26055 41754621 ~ 41755446 (+) True G1983630
TU2267750 lncRNA upstream 119795 41661201 ~ 41661706 (+) True G1983584
TU2267817 lncRNA downstream 301 41938080 ~ 41938676 (+) False G1983625
TU2267818 lncRNA downstream 576 41938355 ~ 41938676 (+) True G1983625
TU2267916 lncRNA downstream 1573 41939352 ~ 41939610 (+) True G1983704
TU2267918 lncRNA downstream 4025 41941804 ~ 41942044 (+) True G1983706
TU2267922 lncRNA downstream 4937 41942716 ~ 41943846 (+) True G1983708
XR_005039551.1 mRNA upstream 24107 41740175 ~ 41757394 (+) False LOC110505959
XR_005039552.1 mRNA upstream 24107 41740175 ~ 41757394 (+) False LOC110505959
XR_005039559.1 mRNA upstream 24487 41740175 ~ 41757014 (+) False LOC110505959
XM_036963138.1 mRNA downstream 7720 41945499 ~ 42020153 (+) False LOC110498275
XM_036963139.1 mRNA downstream 7720 41945499 ~ 42020153 (+) False LOC110498275
XM_036963140.1 mRNA downstream 7721 41945500 ~ 42020153 (+) True LOC110498275
XM_036962556.1 mRNA downstream 116339 42054118 ~ 42059358 (+) False LOC110505968
XM_036962570.1 mRNA downstream 121916 42059695 ~ 42063783 (+) False LOC110505969
TU2267799 other upstream 39902 41740207 ~ 41741599 (+) False LOC110505959
TU2267800 other upstream 39902 41740289 ~ 41741599 (+) True LOC110505959
TU2267650 other upstream 332161 41448402 ~ 41449340 (+) False G1983499
TU2267940 other downstream 125246 42063025 ~ 42103896 (+) True G1983721
TU2268011 other downstream 294461 42232240 ~ 42232904 (+) True G1983777
TU2268082 other downstream 324448 42262227 ~ 42262714 (+) True G1983836
TU2268690 other downstream 481381 42419160 ~ 42453823 (+) True cn112
TU2268800 other downstream 785196 42722975 ~ 42727949 (+) False LOC110505989

Expression Profile