Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001160569.1 |
| length | 788 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | ssr3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 40294831 ~ 40297552 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006613 | cotranslational protein targeting to membrane | biological_process |
| GO:0005784 | Sec61 translocon complex | cellular_component |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| id | description |
|---|---|
| K13251 | SSR3; translocon-associated protein subunit gamma |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2381154 | lncRNA | upstream | 29608 | 40265008 ~ 40265232 (+) | True | G2082384 |
| TU2381149 | lncRNA | upstream | 40294 | 40254114 ~ 40254546 (+) | True | G2082379 |
| TU2381148 | lncRNA | upstream | 40878 | 40253653 ~ 40253962 (+) | True | G2082378 |
| TU2381147 | lncRNA | upstream | 41641 | 40252837 ~ 40253199 (+) | True | G2082377 |
| TU2381084 | lncRNA | upstream | 160449 | 40133934 ~ 40134391 (+) | True | G2082314 |
| TU2381095 | lncRNA | downstream | 1414 | 40298959 ~ 40300524 (+) | True | G2082325 |
| TU2381245 | lncRNA | downstream | 213080 | 40510625 ~ 40512009 (+) | False | G2082474 |
| TU2381246 | lncRNA | downstream | 213080 | 40510625 ~ 40512009 (+) | True | G2082474 |
| TU2381249 | lncRNA | downstream | 215510 | 40513055 ~ 40513280 (+) | True | G2082475 |
| TU2381250 | lncRNA | downstream | 218827 | 40516372 ~ 40516936 (+) | True | G2082476 |
| XM_036965017.1 | mRNA | upstream | 356761 | 39781189 ~ 39938079 (+) | False | LOC110507223 |
| XM_036964981.1 | mRNA | upstream | 593628 | 39694561 ~ 39701212 (+) | True | LOC110507222 |
| XM_036965220.1 | mRNA | upstream | 613280 | 39667989 ~ 39681560 (+) | False | LOC110508028 |
| XM_036965219.1 | mRNA | upstream | 614708 | 39668004 ~ 39680132 (+) | True | LOC110508028 |
| XR_005040116.1 | mRNA | upstream | 1255215 | 39039573 ~ 39039625 (+) | True | LOC118944799 |
| XM_036965107.1 | mRNA | downstream | 363701 | 40661246 ~ 40670079 (+) | False | LOC110508037 |
| XM_036965110.1 | mRNA | downstream | 363767 | 40661312 ~ 40670079 (+) | False | LOC110508037 |
| XM_036965108.1 | mRNA | downstream | 363770 | 40661315 ~ 40670079 (+) | False | LOC110508037 |
| XM_021588481.2 | mRNA | downstream | 363786 | 40661331 ~ 40670079 (+) | False | LOC110508037 |
| XM_036965111.1 | mRNA | downstream | 363793 | 40661338 ~ 40670079 (+) | True | LOC110508037 |
| TU2380828 | other | upstream | 337089 | 39957215 ~ 39957751 (+) | True | G2082162 |
| TU2380578 | other | upstream | 361005 | 39931874 ~ 39933835 (+) | True | G2081949 |
| TU2380477 | other | upstream | 381762 | 39895667 ~ 39913078 (+) | False | LOC110507223 |
| TU2380510 | other | upstream | 457457 | 39827658 ~ 39837383 (+) | True | G2081884 |
| TU2378436 | other | upstream | 2349689 | 37944932 ~ 37945151 (+) | True | G2080014 |
| TU2381755 | other | downstream | 545969 | 40843514 ~ 40844780 (+) | False | LOC110508042 |
| TU2381759 | other | downstream | 547284 | 40844829 ~ 40846039 (+) | False | LOC110508042 |
| TU2381889 | other | downstream | 683825 | 40981370 ~ 40984854 (+) | True | G2083005 |
| TU2382143 | other | downstream | 914659 | 41212204 ~ 41212772 (+) | True | G2083239 |
| TU2382447 | other | downstream | 1208814 | 41506359 ~ 41507173 (+) | True | LOC110507232 |
