RNA id: XM_021588481.2


Basic Information

Item Value
RNA id XM_021588481.2
length 2524
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110508037
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40661246 ~ 40670079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGACGTTACGCACGTAGCTACACTTCCTCGCCCTCTGAAAAAACGATCTACCGATGTAACCAGGTGAAGGCCAAATAGGTAGCTATGTCTGTGTTTTTGACCGTATTAAATGCAATTCATACATAGTTCAAGGCAACGTTCGCAGTCGAATCAACTACAATCCATTTTTTGAATGATAGTCGACACATTCATTCATTAATCATTCATTGTATGGTTTGGCATGTGGTGTCGCATGACAACAGTCAACACAAGGTCGCATGACAACACAAGGTTTCCAGAGGGCACAGCTGGTTTGATGCCCGCGGCTCCACAATGGAGCTATCTGACTCAGTCACACATAAGAACGGGCGGCAGAGGAAGCCTGCTGTCCCCCAGGGGGACATGAGTGACGGAAATAGGGTTCGCAACACCACCCCTgacctggaggaggagggggaagcgTTGCTTCGAGGATCCGACACGGAGAACAACGGACAACCCAGTGTGCAGCCTGGGATCAGAGGGGAGCTGGGGAACGTATCTCTGCTGCTCTTCCTTTATGTCCTCCAGGGTATCCCTCTGGGCCTGGCCGGGAGCATCCCTCTCATCCTGCAGAGTAAGAACGTAAGCTACAAGGACCAGGCCTTCTTCAGCTTTGTCTTCTGGCCCTTCAGTCTCAAGCTGCTGTGGGCCCCTCTGGTTGACGCGCTCTACCTGACCTGGTTCGGACGCCGGAAGTCATGGCTGGTGCCCACCCAGTACCTGCTGGGTCTCTTCATGCTGTACCTGTCGGTTACCGTGGATACGCTGCTGAAAAGTGATGAGGGGCAGGGCCCTGATGTGATAACCCTGACGGCGGTGTTCTTCATGCTGGCCTTTCTGGCAGCCACCCAGGACATAGCAGTGGATGGCTGGGCTCTGACTATGCTGTCTAGGGAGAACGTGGGCTACGCCTCCACCTGTAACTCTGTGGGACAGACTGCTGGCTACTTCCTAGGCAACGTGCTCTTCCTGGCTCTGGAGTCAGCTGACTTCTGCAACAAATACCTGAGAGCAGAGCCTAAAGAGACTGGCATCGTGACACTGTCAGACTTCCTGTTTTTCTGGGGTGTGGTGTTCCTGGTATCGACCACGCTGGTGGCCATTATGAAGAAGGAGAACGCCAGGGGACAGCACGGGAGGAAGAAGGTCCGGGAGGAGACGCAGAGCGTCATGGAAACATACAAACTGCTGCTCTCCATCATCAAGATGCCTGCCGTGTTCACTTTCTGTAGCCTGCTGCTCACTGCTAAGatgggtttctctgcagcagaCGCCGTGACCGGTCTGAAACTGGTAGAGGCAGGTGTTCCTAAAGAGCAGCTGGCATTACTGGCAGTCCCCATGGTTCCACTGCAGGTACTACTACCTCTCATCATCAGTAAATACACCGCGGGACCACGACCACTAGACGTTTTCTACAAGGCCTTTCCCTTcagGTTGTTGATAGGTCTGGGGTATGCTGTGTTGGTGTGGTGGACTCCCAGTTTAAAGCAGGAAGGGGGATTCCCtctctactactacactatagtCCTGTTCAGCTACGCACTGCATCAGGTGGCGCTGTACAGCATGTATGTGGCCTGTATGGCTTTCCATGCTAAAGTGAGTGACCCAGTGATTGGTGGGACTTACATGACCCTGCTGAACACTGTCACCAACCTGGGGGGAAACTGGCCCTCCACCCTGGCATTGTGGATGGTCGACCCACTCACCTCTAAGGAGTGCCAGGGAGCTGCTGGGCAGAAATGTGGCTCCCCAGAGGAGACAGGGCTGTGTGTTAAGGagggcggtgtgtgtgtgacgtcaTTGGATGGTTACTATGTGGAGTCGGTGGTGTGTGCGTTGATAGGACTAACGTGGTGGGTGTGGCTAGGGAACAGGATGAGAAGGCTACAGGACCAGAGCCCTGCAGCGTGGAGGTGCAGGATCGGCCAATGACAACGTTCACCCAGCTCCTGACCCCAGCAAGGCCAATCGCCAGACAGCTACAGTCTGATATACACGCTTCTGTCAGCTCAGCCTTTGACCCTGGCCTGaacatcacttcctctctctctcatttctgtttttctgtcttcctccgactctctttatttctctcctttctctgtccatctctctctccttctctgatgACTCTTCTCAGTATCCCTCTTttttttccctctcccccttcttcaCACCCTTTGCTCAGTGTATATATTATCCTTTGCTCAGTGTATATATTATCCTTCAGCAGTCTGTCTATGCGTTAACTGTAATTGTGGTCCGGCCACCACAAGACTATGGACCATAACGGTCAATAACCACATACTCTCTTGGAGAGTCAAGAGTTACATTTCTCCTTGCAACGTCCTCACCATGGCTTCTGTGGGTGCCGCTTCAACTATGTCCCATTGGAAACAAAAGAAGGAACTATTCTTCTTGCTAGGAATATTTACAGTAGACATAGCTGCTCCTTCTCAATCCACATTGTCTGCTACTTAAACTATTTCACTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381316 lncRNA upstream 20940 40636576 ~ 40640391 (+) True G2082525
TU2381308 lncRNA upstream 37702 40622440 ~ 40623629 (+) True G2082517
TU2381309 lncRNA upstream 41236 40619412 ~ 40620095 (+) True G2082518
TU2381307 lncRNA upstream 43488 40617547 ~ 40617843 (+) True G2082516
TU2381278 lncRNA upstream 65050 40596030 ~ 40596281 (+) True G2082500
TU2381291 lncRNA downstream 1611 40671690 ~ 40672527 (+) False G2082509
TU2381294 lncRNA downstream 1611 40671690 ~ 40671912 (+) False G2082509
TU2381287 lncRNA downstream 1993 40672072 ~ 40672527 (+) True G2082509
TU2381352 lncRNA downstream 25529 40695608 ~ 40696534 (+) True G2082554
TU2381405 lncRNA downstream 135394 40805473 ~ 40805922 (+) False G2082604
XM_021586905.2 mRNA upstream 363779 40294831 ~ 40297552 (+) False ssr3
NM_001160569.1 mRNA upstream 363786 40294840 ~ 40297545 (+) True ssr3
XM_036965017.1 mRNA upstream 723252 39781189 ~ 39938079 (+) False LOC110507223
XM_036964981.1 mRNA upstream 960119 39694561 ~ 39701212 (+) True LOC110507222
XM_036965220.1 mRNA upstream 979771 39667989 ~ 39681560 (+) False LOC110508028
XM_036964772.1 mRNA downstream 22324 40692403 ~ 40836419 (+) False LOC110507225
XM_036964769.1 mRNA downstream 22324 40692403 ~ 40840064 (+) False LOC110507225
XM_036964771.1 mRNA downstream 22324 40692403 ~ 40840064 (+) False LOC110507225
XM_036964770.1 mRNA downstream 58936 40729015 ~ 40840064 (+) True LOC110507225
XM_021588488.2 mRNA downstream 170627 40840706 ~ 40847141 (+) False LOC110508042
TU2380828 other upstream 703580 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 727496 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 748253 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 823948 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 2716180 37944932 ~ 37945151 (+) True G2080014
TU2381755 other downstream 173435 40843514 ~ 40844780 (+) False LOC110508042
TU2381759 other downstream 174750 40844829 ~ 40846039 (+) False LOC110508042
TU2381889 other downstream 311291 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 542125 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 836280 41506359 ~ 41507173 (+) True LOC110507232

Expression Profile