RNA id: TU2373240



Basic Information


Item Value
RNA id TU2373240
length 323
lncRNA type intronic
GC content 0.56
exon number 2
gene id G2075626
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33693931 ~ 33694347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGAATCCTGTTATATGAGGATTTGCATGTGAAGTAGTTGCCTGACCATTCATGACAGCTTACTAGGGCTGTCCCCTGTGCTGGCTCCCCTATGGCATGTGACTCATGTACCTCCTGTGTCCCTGGTTtgcagagaggggtgaggggggtcGGAGGGACTCTCACAGCCTCCTGCTAGCCACACTGAGCCCATCATCAGAGTTGACTCTCACAGCCTCCTGCTAGCCACACTGAGCCCATCATCAGGGTTGACTCTCACAGCCTCCTGCTAGCCACACTGAGCCCATCATCAGAGCTGACTCTCGCAGCCTCCTGCTAGCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2373205 lncRNA upstream 49637 33643913 ~ 33644294 (+) True G2075593
TU2373198 lncRNA upstream 56022 33636280 ~ 33637909 (+) True G2075586
TU2373199 lncRNA upstream 57047 33636625 ~ 33636884 (+) True G2075587
TU2373190 lncRNA upstream 64442 33629149 ~ 33629489 (+) True G2075578
TU2373178 lncRNA upstream 83590 33609912 ~ 33610341 (+) True G2075566
TU2373266 lncRNA downstream 34868 33729215 ~ 33729671 (+) False G2075649
TU2373265 lncRNA downstream 34895 33729242 ~ 33729671 (+) True G2075649
TU2373267 lncRNA downstream 36208 33730555 ~ 33730899 (+) True G2075650
TU2373276 lncRNA downstream 51351 33745698 ~ 33749013 (+) True G2075657
TU2373307 lncRNA downstream 124565 33818912 ~ 33819167 (+) True G2075688
XM_021588436.2 mRNA upstream 498118 33184578 ~ 33195813 (+) False LOC110507999
XM_021588433.2 mRNA upstream 498118 33184579 ~ 33195813 (+) False LOC110507999
XM_021588435.2 mRNA upstream 498118 33184579 ~ 33195813 (+) False LOC110507999
XM_021588432.2 mRNA upstream 498118 33184581 ~ 33195813 (+) True LOC110507999
XM_021588431.2 mRNA upstream 512541 33158868 ~ 33181390 (+) True LOC110507998
LOC110507198 mRNA downstream 1067271 34761618 ~ 34766144 (+) True LOC110507198
XM_021587092.2 mRNA downstream 1127274 34821621 ~ 34827171 (+) False LOC110507199
XM_036965162.1 mRNA downstream 1127274 34821621 ~ 34827171 (+) True LOC110507199
XM_021587153.2 mRNA downstream 1167948 34862295 ~ 34863448 (+) True LOC110507268
LOC110507201 mRNA downstream 1169396 34863743 ~ 34864743 (+) True LOC110507201
TU2373116 other upstream 172927 33516241 ~ 33521004 (+) True G2075508
TU2372789 other upstream 703703 32988501 ~ 32990228 (+) True G2075208
TU2372519 other upstream 1069963 32623624 ~ 32623968 (+) True G2074973
TU2372396 other upstream 1105159 32528897 ~ 32588772 (+) False LOC110507985
TU2372178 other upstream 1229055 32464238 ~ 32464876 (+) True G2074650
TU2373306 other downstream 123185 33817532 ~ 33817988 (+) True G2075687
TU2373344 other downstream 204930 33899277 ~ 33899623 (+) True G2075724
TU2373037 other downstream 222401 33916748 ~ 33934901 (+) False robo1
TU2373636 other downstream 807902 34502249 ~ 34502705 (+) True G2076000
TU2373744 other downstream 1018229 34712576 ~ 34714556 (+) True G2076102

Expression Profile