RNA id: TU2373327



Basic Information


Item Value
RNA id TU2373327
length 226
lncRNA type intronic
GC content 0.55
exon number 1
gene id G2075708
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33861726 ~ 33861951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctcatctcctcaccctgcacccctctcctctcatctcctcacactgtacccctctcctctcatctcctcacactgtacccctctcctctcatctcctcacactgcacccctctcctctcatctcctcacactgcaaccatctcctctcatctcctcacactgtacccctctcctctcatctcctcacactgtacccctctcctctcatctcctctcatcttaTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2373326 lncRNA upstream 1730 33859791 ~ 33859996 (+) True G2075707
TU2373324 lncRNA upstream 7492 33854018 ~ 33854234 (+) True G2075705
TU2373322 lncRNA upstream 8363 33852980 ~ 33853363 (+) True G2075703
TU2373321 lncRNA upstream 8947 33852477 ~ 33852779 (+) True G2075702
TU2373315 lncRNA upstream 18127 33843399 ~ 33843599 (+) True G2075696
TU2373328 lncRNA downstream 2601 33864552 ~ 33864960 (+) True G2075709
TU2373329 lncRNA downstream 7574 33869525 ~ 33869801 (+) True G2075710
TU2373338 lncRNA downstream 21084 33883035 ~ 33883326 (+) True G2075719
TU2373348 lncRNA downstream 41696 33903647 ~ 33903923 (+) True G2075728
TU2373038 lncRNA downstream 73007 33934958 ~ 33935638 (+) True robo1
XM_021588436.2 mRNA upstream 665913 33184578 ~ 33195813 (+) False LOC110507999
XM_021588433.2 mRNA upstream 665913 33184579 ~ 33195813 (+) False LOC110507999
XM_021588435.2 mRNA upstream 665913 33184579 ~ 33195813 (+) False LOC110507999
XM_021588432.2 mRNA upstream 665913 33184581 ~ 33195813 (+) True LOC110507999
XM_021588431.2 mRNA upstream 680336 33158868 ~ 33181390 (+) True LOC110507998
LOC110507198 mRNA downstream 899667 34761618 ~ 34766144 (+) True LOC110507198
XM_021587092.2 mRNA downstream 959670 34821621 ~ 34827171 (+) False LOC110507199
XM_036965162.1 mRNA downstream 959670 34821621 ~ 34827171 (+) True LOC110507199
XM_021587153.2 mRNA downstream 1000344 34862295 ~ 34863448 (+) True LOC110507268
LOC110507201 mRNA downstream 1001792 34863743 ~ 34864743 (+) True LOC110507201
TU2373306 other upstream 43738 33817532 ~ 33817988 (+) True G2075687
TU2373116 other upstream 340722 33516241 ~ 33521004 (+) True G2075508
TU2372789 other upstream 871498 32988501 ~ 32990228 (+) True G2075208
TU2372519 other upstream 1237758 32623624 ~ 32623968 (+) True G2074973
TU2372396 other upstream 1272954 32528897 ~ 32588772 (+) False LOC110507985
TU2373344 other downstream 37326 33899277 ~ 33899623 (+) True G2075724
TU2373037 other downstream 54797 33916748 ~ 33934901 (+) False robo1
TU2373636 other downstream 640298 34502249 ~ 34502705 (+) True G2076000
TU2373744 other downstream 850625 34712576 ~ 34714556 (+) True G2076102
TU2375270 other downstream 1153228 35015179 ~ 35030337 (+) True gucy1a2

Expression Profile