RNA id: TU2389684


Basic Information

Item Value
RNA id TU2389684
length 391
lncRNA type intronic
GC content 0.32
exon number 2
gene id G2089143
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48477110 ~ 48477900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctataagaggaacaggagctctacaatactttagatataATATCCTATAAAGAGGAaaaggagctccacaatactttagagataatatcctataagaggaacaggagctctacaatactttagagataatattctataaagaggaacaggagctctacaatactttagatataatattctataaagaggaacaggagctctacaatactttagagataatattctataaagaggaacaggagctctacaatactttagagataatatcctataaagaggaacaggagctctacaatactttagagataatatcatataaagaggaacaggagctctacaatactttagatataatatcctataagaggaacaggagctctacaatacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389676 lncRNA upstream 6295 48469730 ~ 48470815 (+) False G2089140
TU2389677 lncRNA upstream 6295 48469730 ~ 48470815 (+) True G2089140
TU2389639 lncRNA upstream 70061 48406817 ~ 48407049 (+) True G2089112
TU2389600 lncRNA upstream 72635 48403436 ~ 48404475 (+) True nars2
TU2389632 lncRNA upstream 91756 48383952 ~ 48385354 (+) True G2089106
TU2389685 lncRNA downstream 638 48478538 ~ 48479901 (+) True G2089144
TU2389688 lncRNA downstream 9825 48487725 ~ 48488801 (+) True G2089147
TU2389698 lncRNA downstream 16035 48493935 ~ 48494275 (+) False G2089153
TU2389697 lncRNA downstream 16151 48494051 ~ 48496506 (+) True G2089153
TU2389699 lncRNA downstream 22921 48500821 ~ 48501196 (+) True G2089154
XM_036965512.1 mRNA upstream 18671 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 158025 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 158025 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 994076 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1400389 47074530 ~ 47076721 (+) True LOC110513068
XM_036964717.1 mRNA downstream 155472 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 155472 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 611983 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 723548 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 845113 49323013 ~ 49323866 (+) False LOC118944717
TU2389657 other upstream 21624 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 285748 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 285748 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 285748 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 612281 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 449075 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 580105 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 834843 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 845269 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 855547 49333447 ~ 49334183 (+) True G2090103

Expression Profile