RNA id: XM_036966726.1


Basic Information

Item Value
RNA id XM_036966726.1
length 3660
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110508458
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9107174 ~ 9123547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATCTACATTAAATGCAGATAGAAACTACCGTCAGGTCTGAGTTTTGGGGTGTTTTGGTATTTTGGTGTGTTTTTGGTGGCTATAACTGGAGTAGTGTTGCACGTTCAGGCTCGAGTGACAAAGAGTTGGAAGACGCTGGTCCTAGGAGGGCTACAATAACAAGCGAGATGCCGTCCCCCACAGCTCAGGGTCTAGGCCCAGGTCAGGAGAAGAAGATTGGCCACAGGAGAGTAGACGCCTCTGGAGAGACCACCTACAAGAAGACCACGTCCTCTGCCCTGAAAGGTGCCATCCAGCTGGGCATCGGCTACACGGTGGGCAACCTGAGCTCCAAGCCAGAGAGAGATGTCCTCATGCAGGACTTCTATGTGGTGGAGAGCATTTTCTTCCCCAGTGAGGGCAGTAACCTGACTCCTGCACATCACTACCCAGACTTCAGGTTTAAGACCTACGCCCCAGTGGCCTTCCGCTACTTCAGAGAGCTGTTTGGGATCCGACCCGATGACTACCTGTACTCTCTATGTAATGAGCCCCTAATCGAGCTGTCCAATCCCGGTGCCAGCGGCTCCATATTCTACGTAACCAGGGACGACGAGTTCATCATCAAAACAGTCAATGCCAAGGAGGCGGAGTTTCTGCAGAAACTACTTCCGGGATACTACATGaaTCTGAATCAGAACCCGAGGACCCTGCTTCCTAAGTTCTTTGGTCTCTACTGCGTCCAGTCTGGGGGTAAAAACATCCGTATCGTGGTCATGAACAATGTGTTACCGCGCGCCGTACGCATGCACCTCAAGTTTGACCTGAAGGGCTCCACGTATAAACGCCGTGCGtcgaagaaagagagggagaaatcgAATCCCACCTTTAAAGATCTGGACTTTATAGCAGATGTACCGGAAGGACTGACCCTGGATCAGGATACATACAGCGCCCTGCTAAAGACCCTACAGAGAGACTgtctgGTGCTCGAGAGCTTTAAGATCATGGACTACAGTCTACTGCTGGGGGTCCATAACCTGGGCCTGGCTGTGAGAGAGTCCCAGGGCTCACCAGCAGGGGGCGATGAAAAGAAGCCTCAGGCCCAGAGAGCCCTCTACTCTACTGCCATGGAGTCTATACAGGGAGGGAAGGCTTGTAGAGACACATTAGACCACGATGCTACgaTGGGTGGTATTCCTGCTGTGGATGGTAAAGGAGAGCGTCTCCTCCTCTTTATTGGAATTATCGACATCCTGCAGTCCTACAGGCTAATCAAGAAACTGGAGCACTCGTGGAAGTCTCTGATCAGTGACGGGgaCACAGTGTCTGTCCACAGGCCCAGTTTCTATGCAGACAGGTTCTACAAGTTCTGCAGCACCACTGTCTTTAGAAAGAGCTGCTcCCTGAGGTCTTCTCCCTCCAAGAGAGGGCGTGGGGGGGCTCTGCCCGCACCCAAAAACAGTGTCCAAACACAGCTTTccgtagagagagaggagaaccagGAGAACGAAGACCTGCACCTCAGAGGGGCTCGTGGCTTCCCTCTGCTGGAGGAGGACGgtCTGAGAGAGCATCCCCACACTCCTCCGTCTTTTGAGGATGCAACCACAGCATCCATCGCTACCACTCTCTCTTCAAACAACTCTCTCCCTACCACACCCTTTGATACACCAGAACACCCACgcttcagGAGGCCAACCCACTCTCCACGGGACCGTGAGGGGAGTTTCAGGCCACAGCAGGAAGTAGTGGCGGTGCACGAGCAGACCATCACTGTAGCTGTAGAGGTGAAGAGGGAACCtacaaccagTGTGGTTCCAGAGGACCTTCAGGACTCTAAAGCAACAGAGGAGGAAGTCATCACACAGACCACAGCTGCTTCCCCCACCTCTACACCTCCTtcaacccctcctccctcctccgccCCTCCATCCTCCACTACTCCCTGCTCagtcccaccagcctccactctccctcgctcccttcctccctcagtcCCTTCCTCCTCTGCCCCTCACCCTCACTCTAACTCCACTCTCCCTTCTTCTTCCACTCGTCCTTTCTCCACCAATCAATCATCAGCTCACATCGCCTCCACCCTTCCACCCTCTGCAGTCCCTCCAGCCTCCAACTCGCCCTCTTTCACCACTCCCGCCTccacccttccctcctcctccccccattctTCCCCCCTCCTTCCAagcacccctccctcctctctccctccgagTCCCCAGGTGACAGCAGAACGCTTTTCGTCCAATCATCTGTCTGTCACCTCGTCCGTCAGCCACAACTCACTGGAGGGGGAGGTGCCAGTCtcagacatctactttTATGCTGATGGGAGGTATTGGGTGTACTCCCCAATTCTGGGTCGTAAGAAGCTCAACTCAAGCTCTAGCTGCAATAATCAGGAGGACAGGAGCTGGGTGTACTCTCCTCTGCACTACGGCTCAGAGTCCAGACCTGGCTCTGACGGGGAGAGCGAGACAtaagttgagtgGAGTCTCCAATGTCAGCGAATCACGTTGAGAGGATTGAAGACTACAGACAGAAGCCGTGATGCTTTGCGACGCTCCAGGAAGCTCTATGAAGCTTCTACGGCATTGTGTAACCCTTGTGGCCCAATCTGCATGTGAAGGCTTGTTTTACCCACGTGGATGGAGAAGGATTCTGTGGgaaaacgtaataaaatgttACTTCTCTGCTTTGGCAACACCTtcctaacacacacgcacactaacacacacgtcttcacactcacacaccctaACATTGTCCTATATAAGTATGCAACAATAATGTGCCCTTTGCCGCAAAATCAACTCATAAACATGAAAGTATGCATAATCTTCAATGGGAGTACTTTGAATAAAACCATATTGCAACCATTTCCAAACATCAGCTAAGGCTGCCCAGAGAGACTATCGTAATAGTACTTTAGTTGGTTTTGTCGTGTTAAGAATGATATTTGTCTTTTGTTAACTGTGCTGTAATATCACAAATGGAATATCATGTGTTATATTGTCTTGGTCAGGTTTTTGACTCCTATGGTTAAATGTTGGAGAGGTTTGTCTTTTTATGAAGCAGAACTTTTTTTTTCTCAAGTTGTTTATAATGTTTTGTGGTGTTCACTGGTCTGATGGTGGTGGTTTCAAATTCAAGTTGAGAATCGTGAACATTTCTGTCTGGAATTGTGCTGTGCTCTCTGTGTTCTCACAGGGCTACTGAAGTCTTCACAATGGTCATGAAAACCTGAACATTTTATTTCATTATTAGCCCTCTAAAACTATCATTTTGtaaatgtgtttaaaaaaaaaaaacatatctttgTCATTGTTTTACATTTAAATGTTAcgtttgagtaatttagcagaagctcttatccagagcaacctacagttagttagtgcattcatgttaagatagctaggtgggacaatcGCATATCATATGCACAGTAAGGACACATTTCCTCAATAAAggagctatcagcaaagtcagggctaggaaggggggggggggggcggtcaaGTGGTCAGTTTATTTATTTGTTGAATTATTTGTTTCCTCTATTGCTGgcgaatgttttttttttttttgttgagatgTACTGAACAAATGTGATATAAGATCATATAAATGTGTTATTGTTGCCTTACTGAGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2404401 lncRNA downstream 50808 9055019 ~ 9056366 (-) True G2102112
TU2404372 lncRNA downstream 105327 9001577 ~ 9001847 (-) True G2102088
TU2404371 lncRNA downstream 105654 9001243 ~ 9001520 (-) True G2102087
TU2404367 lncRNA downstream 113329 8992929 ~ 8993845 (-) True G2102083
TU2404361 lncRNA downstream 125952 8980992 ~ 8981222 (-) True G2102077
TU2405098 lncRNA upstream 10689 9129789 ~ 9143732 (-) True G2102729
TU2405111 lncRNA upstream 31379 9150479 ~ 9152400 (-) True G2102736
TU2405104 lncRNA upstream 112594 9231694 ~ 9255166 (-) True G2102731
TU2405188 lncRNA upstream 328639 9447739 ~ 9448387 (-) False si:ch73-71c20.5
TU2405189 lncRNA upstream 328639 9447739 ~ 9448703 (-) False si:ch73-71c20.5
XM_021588982.2 mRNA downstream 111428 8993922 ~ 8995746 (-) True LOC110508456
XM_021588700.2 mRNA downstream 129018 8976699 ~ 8978156 (-) False LOC110508274
XM_036966037.1 mRNA downstream 196673 8781818 ~ 8910501 (-) False epha4b
XM_036966038.1 mRNA downstream 196673 8781818 ~ 8910501 (-) False epha4b
XM_036966039.1 mRNA downstream 196673 8805364 ~ 8910501 (-) True epha4b
XM_021588986.2 mRNA upstream 35617 9154717 ~ 9180242 (-) False LOC110508459
XM_021588987.2 mRNA upstream 39923 9159023 ~ 9180209 (-) False LOC110508459
XM_036966816.1 mRNA upstream 136846 9255946 ~ 9263669 (-) True LOC110508462
XM_021588994.2 mRNA upstream 146204 9265304 ~ 9269449 (-) True LOC110508463
trnal-caa-108 mRNA upstream 220678 9339778 ~ 9339890 (-) True trnal-caa-108
TU2404356 other downstream 129075 8976852 ~ 8978099 (-) True LOC110508274
TU2403860 other downstream 624761 8481732 ~ 8482413 (-) True LOC118936616
TU2403666 other downstream 867321 8238144 ~ 8239853 (-) True G2101464
TU2403426 other downstream 948656 8158219 ~ 8158518 (-) True G2101243
TU2403222 other downstream 1108309 7993411 ~ 7998865 (-) True LOC110508443
TU2405120 other upstream 59234 9178334 ~ 9180150 (-) True LOC110508459
TU2405103 other upstream 112594 9231694 ~ 9255166 (-) False G2102731
TU2405308 other upstream 448866 9567966 ~ 9569051 (-) True G2102910
TU2405415 other upstream 657519 9776619 ~ 9776908 (-) True G2103015
TU2405361 other upstream 677394 9796494 ~ 9811858 (-) True LOC110508473

Expression Profile