RNA id: XM_021589302.2


Basic Information

Item Value
RNA id XM_021589302.2
length 3103
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110508638
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16170026 ~ 16193127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggttaagggcttgaaagcatttcacggtacggtctacacttgttgtattcggcgcatgtgacaaatactattTTATTTGACCCGGTGTCCAAGTAGGCTACATGTAGCTATGTGTGTAGAAAACGTTTCACCACAGGAAGGCTGGGCATGACTTCCATCTAATTCCTACAGACGATTGCTAGAGGGGGAGTATCTCATCCCTAGACTACGAATGCGTCATCGACATGCAGACCCTCTCATGTGTGGACTCCTGCTTCATCCCTGCCTCCATACAAGCAACAGTACCTCAGACAGTACAAGTTAGACATGTTATTGCAAAAGTTGATGTGGACCAATGTGACACCATCACATTGCACTTTACAACTAGTGACCCCGACTTCACAGTACGACCTGATGGCACTATAGTAACAGTCGCCATCACCATGGTACCAGCCAATGGCAGAACATTCTCAGTGCAGTTTCAGGACCCCAATGGTCAGAAGAGAGAAATTAATGTTTACCTTGTCCAGAACTCTAGAAAGGTATTGAAAGATGGCCTACTAAAGCGCTCCAAAAGACGTTGGAGTCCTCTGCCCTTCAACATCATAGAAAACGACGTTCCGCCATTTCCAAAGGACGTTGATCTGATTGCATCTGATTCGTCGGCCACTCGCAGTGTGTACTACACCATCAGTGGGCCTGGAGTGACAGAGGAGCCTGTGggtgtgttcagtgtggtgaTGGAGACTGGGATGTTGAGGGTCAACAAAGCTGTCGACCGCGAGAGAACTCCTCAGTTTGTATTTCAAGCCAGAGTGTTTGACAGATACACCAACCAGGAGACAGATCTACCATTACCCATCACAGTGAATGTAGACGATGTGAACGACAATGCACCAACTTTCACTGGCCTACTGCAGTTTACTGTGCTGGAGCAAAGCAAAGCAGGGACGATGGTGGGGATGGTGAATGCCACAGACATAGACCAGCGTGGTACAGACCACACTAAGATCAGGTACTCCCTCCTCTCTGGGACTAACCTGTTCTACATTAACCCAGAGACGGGAGTCATCAGCACCAAAACAGACACCCTCGACAGAGAGGTGAATGATAATTATTTGGTGACAGTTGAAATCAGAGACATGAATGGAGCTCTGAATGGTCTATTCAACACAGCCACAGCCACCATTGTGTTGGGTGATATCAACGACAACCCTCCCACATTCACAAAGACATCTTACGATGTAAAAGTTAAAGAGAACCAAGGAGAGGGACTCATCCTCAGAATCCCCATTGAAGATAAGGACTTGGTGAAGACACCAAACTGGAACACTGAGTTTGTCATCCAAAAGGGGAACGAAAACGGGAACTTCAGGATCGAAAGAGACCCCAAAACGAACGAAGGACTAATTTACCTAATAAAGCCTCTAGACTACGAGAAGACCAAGAACCTAAAGCTGGAGGTGTTGGCCCGTAACCAGGCTGAGCTGAGTGGGACCAAGGCCCAGTGGATGTCCATCCCTGTAGACGTCTCTGTAGTGGACGAGGACGAGGGACCAGAGTTCACCGCCCCCACCGTACTCTTCACAGTCAAGGAGAACACTCCTAACGACACCCTGATTGGCACCTACATAGCCATAGACCCAGAGACCAAGAGCAGCGCCGGCATCAAgTATTACAAGGTCTCAGACCCTGCTTCATGGATCAAGGTAGATGAAAGCACCGGGCAGCTGAAGATCGCCAATAATATCGACAGGGAGTCCCACTTTGTAACGAATGGCGTGTACAACGTCACTATGAAAGCTGTTGATGCCAGTCTCAAGACAGGTACAGGGACAGTGATTATTCAAGTGGAGGATGTGAACGACCACGTCCCAGTCATCCCCTCTAAAGACCTGGTGGTGTGTgagaaggatgggggagagatgggctCCGTGCTGGTGGTAGCAGAGGACAAAGACCGAGCTCCATTCGCCGCCCCCTTCAGCTTCGAACTGGGAGAGGAGCATGATGGGAGATGGGCTGTGAAGCGACTTAATGACACTGCAGGGATGTTGGAGCACACCATGGAGCTCCCTAATGGTCTGTATACTGTCCCCCTGATGGTCAAGGACCTACAGGGATTTGGAAAGACCCAGACGGTAATGGTCCGGATCTGCCGCTGCAGGAACGGAGCGTGTTTGGCCTACCAGAACTCCACGTCGCTGGGGGTGTGGGCCATCCTGGCCATGCTGCTGGCGCTGTGCCTGCTACTTCTTCTCTGTATCTTCTTTGCATTCATCTGTGTTACAAAGAATGAGAAAATGGAGCTGGAAGATATGGGAGACAGTGGCGGTATCCTCCTGAAGTCTAACATTGAGGCCCCAGGGGATGCAGTGGATTCAAATCTCATCATCGTTCCTGCATCTGGGATCGACTCATCAGTGAAGGGATCCATGATTGACGTGGGGTGGGAGGGAGCTAAGAACTCTGGTATGATTGGAGGAGGCCTGGGCGCTCAACAGAATCTGCTACAGGAGTCCGGTGGTGTCATAGTGACCGATATGGAGACCGGCTTCTCAGGCCAATACGAAAGCAGCCAATACGTTGGACAATATGGCAGTGGACAATATGGTGGAGGTCAATATGGCGGTGGAAACATGACTTTTGACAACACACGTTTCATGAAATTCAACGACTCTGCAGCCTGGCACACCTGGCAAACGAACGGGCTGTTTTTACAACAGAAGTTGGCTTACCTAGGGACGAGGGAGGAGGGGCGATATGCCGATGACATCATCCACGCGTACGGCTTCGAGGGGGTGGGGTCTCCAGCCGGCTCGGTGGGCTGCTGCAGTGACCAAGGCAACCAGGAAGACCTGGACTTTCTAAACACATTGGGGCCAAAGTTCAAGACATTAGCTGAGggcACTTCGCATCCTCAGCTGCATCTGCGCCCCCACAGTTGACACACAATGCTTTCTCTATCCCAACTTTACACTCCCTCTGACTACCCTCCTGCACATTTCTCACATTGTGGGATATCCCTTCTACACAATGCTTCAACATGTCTGAATCCTTGGCACCTATACATAGCTGCGGGATGCAGGGATgttgagggtgctgcagcacccctgatAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2413225 lncRNA upstream 24817 16143168 ~ 16145209 (+) True G2110101
TU2413222 lncRNA upstream 99636 16070185 ~ 16070390 (+) True G2110098
TU2413221 lncRNA upstream 100511 16069256 ~ 16069515 (+) True G2110097
TU2413102 lncRNA upstream 183268 15986333 ~ 15986758 (+) True G2109984
TU2413101 lncRNA upstream 183988 15985791 ~ 15986038 (+) True G2109983
TU2413411 lncRNA downstream 77272 16270399 ~ 16270613 (+) True G2110278
TU2413566 lncRNA downstream 209356 16402483 ~ 16402721 (+) True G2110432
TU2413630 lncRNA downstream 248013 16441140 ~ 16441357 (+) True G2110495
TU2413637 lncRNA downstream 252137 16445264 ~ 16445623 (+) True G2110502
TU2413666 lncRNA downstream 286673 16479800 ~ 16517301 (+) True G2110531
XM_021589297.2 mRNA upstream 30274 16133508 ~ 16139752 (+) True LOC110508636
XM_036966130.1 mRNA upstream 37463 16073550 ~ 16132563 (+) False LOC110508635
XM_036966132.1 mRNA upstream 37463 16073878 ~ 16132563 (+) True LOC110508635
XM_021589286.2 mRNA upstream 266365 15900655 ~ 15903661 (+) True LOC110508631
XM_021589285.2 mRNA upstream 273858 15831164 ~ 15896168 (+) False LOC110508629
LOC110508172 mRNA downstream 102217 16295344 ~ 16296279 (+) True LOC110508172
XM_036965888.1 mRNA downstream 265085 16458212 ~ 16541579 (+) True LOC110508639
XM_036966542.1 mRNA downstream 616344 16809471 ~ 16813125 (+) False LOC110508278
XM_021589308.2 mRNA downstream 631132 16824259 ~ 16839283 (+) False LOC110508640
XM_021589305.2 mRNA downstream 631885 16825012 ~ 16839283 (+) False LOC110508640
TU2413068 other upstream 221165 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 231169 15938511 ~ 15938857 (+) True G2109948
TU2409894 other upstream 2256799 13911427 ~ 13913227 (+) True G2107033
TU2409352 other upstream 3026431 13143313 ~ 13143595 (+) True G2106557
TU2409341 other upstream 3035541 13133894 ~ 13134485 (+) True G2106549
TU2413642 other downstream 254985 16448112 ~ 16448502 (+) True G2110507
TU2414093 other downstream 619467 16812594 ~ 16812796 (+) True LOC110508278
TU2414198 other downstream 760657 16953784 ~ 16958852 (+) True G2111044
TU2414472 other downstream 1218017 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 1515129 17708256 ~ 17708629 (+) True G2111457

Expression Profile