RNA id: TU2414198



Basic Information


Item Value
RNA id TU2414198
length 417
RNA type TUCP
GC content 0.53
exon number 2
gene id G2111044
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16953784 ~ 16958852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctacctatgtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcactcacctaacagaagaatccgaccaagaatggacccagcgacttcggatcctctccactcagccgtcgagatccagggagcgatgctaggcagacacgagcaggaattgtctgctgctcgacatgccgttgagaccctggccacccaagtctccaacctcacagaacaggttcaccatctccgcctcgatccaccggccacttccagggctttcgaatctccggagcccagaatcaataacccgccgtgttactctggggagcccactgaatgccgctcgttcctcacccagtgtgatattgtgttttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2414151 lncRNA upstream 28097 16923288 ~ 16925687 (+) True G2110998
TU2414155 lncRNA upstream 64517 16887540 ~ 16889267 (+) True G2111002
TU2414115 lncRNA upstream 117198 16835835 ~ 16836586 (+) True G2110968
TU2414084 lncRNA upstream 152303 16801279 ~ 16801481 (+) True G2110940
TU2414082 lncRNA upstream 153716 16799420 ~ 16800068 (+) True G2110938
TU2414315 lncRNA downstream 218566 17177418 ~ 17177657 (+) True G2111155
TU2414368 lncRNA downstream 302947 17261799 ~ 17265127 (+) True G2111203
TU2414400 lncRNA downstream 346544 17305396 ~ 17306544 (+) True G2111232
TU2414625 lncRNA downstream 720870 17679722 ~ 17680022 (+) True G2111444
TU2414624 lncRNA downstream 721693 17680545 ~ 17680793 (+) True G2111443
XM_021589309.2 mRNA upstream 31915 16901891 ~ 16921869 (+) False ss18
XM_021589310.2 mRNA upstream 31915 16901891 ~ 16921869 (+) False ss18
XM_021589311.2 mRNA upstream 31915 16901891 ~ 16921869 (+) False ss18
XM_021589313.2 mRNA upstream 31915 16901891 ~ 16921869 (+) False ss18
XM_021589312.2 mRNA upstream 31915 16901892 ~ 16921869 (+) False ss18
XM_021589322.2 mRNA downstream 51673 17010525 ~ 17154942 (+) False LOC110508645
XM_036967105.1 mRNA downstream 51673 17010525 ~ 17154942 (+) False LOC110508645
XM_036967103.1 mRNA downstream 51743 17010595 ~ 17154942 (+) False LOC110508645
XM_036967104.1 mRNA downstream 51743 17010595 ~ 17154942 (+) False LOC110508645
XM_021589321.2 mRNA downstream 51860 17010712 ~ 17154942 (+) True LOC110508645
TU2414093 other upstream 140988 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 505282 16448112 ~ 16448502 (+) True G2110507
TU2413068 other upstream 1004923 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 1014927 15938511 ~ 15938857 (+) True G2109948
TU2409894 other upstream 3040557 13911427 ~ 13913227 (+) True G2107033
TU2414472 other downstream 452292 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 749404 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 796085 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 944346 17903198 ~ 17903924 (+) True G2112127
TU2416413 other downstream 1708263 18667115 ~ 18668496 (+) True G2113059

Expression Profile