RNA id: TU2414155


Basic Information

Item Value
RNA id TU2414155
length 1613
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2111002
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16887540 ~ 16889267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagagctggtgtaactgagtcaggtatgtaggcctccttgctcgaacatgctttttcaattctgcccacaaatgttctatgggattgaggtcagggctttgtgatggacaccaataccttgactttgttgtccttaagccattttgtcacaactttggctgtatgcttggggtcattgtccattttgaagacccatttcTGAccacaacatgatgctgccagccccaTGTTTCACGGTTGGTGAAGGaaaaagcctccccctttttcctccaaacataacgatggtcattatggccaaaaagttctaattttgtttcaaaccagaggacatttctccaaaaagtacaatctttgttcccatgtgcagtttcaaaccgtagtctggctttttttatgccgcttttggagcagtggcttcttccttgctgagcggcctttcaggtcatgtcaaTATaggggactcgttttactgtggaaatagatacttttgtaccggtttcctccagcatcttcacaaggtcctttgctgttgttgcgggattgatttgcactttccacaccaaaatacgttcatctctaggagacagaacacatctccttcctgaatagtatgacggttgcgtggtcccatggtgtttatacttacgtactattgcttgtacagatgaacgtggttgtatgaaccagacttgtggaggtctacaatttttgagaTCTTGGTTaagttctttggattttcccatgtcaagcaaagaagcactgagtttggtaaggtaggccttgaaatacattcataggtacaccgccaattgactcaaatgatgtcaattagcctatcagaagcttcgaaagccatgacatcattttctggaattttccaagctgtttaatggcagagtcaacttagtgtattgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaatattacttgtgatacagtgaaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaatttgtggagtggttgaaaaaaaatagctatgactccaatctaagtgtatgtaaacttccgacttcaactgtaactgcaCTTTAAATGACTATGTGAGAGATGAGCGCATCATAAAGCAGACCGTCTGGGGCCTGGGCTACTCTGCATTCGCTGAATGAGTGATATTCCTAAAGAATGCTGGTAAATGGAAACATTGTCGTTAAGGATGTTGAGTCTACTCTCTGTCGGAGTGAGGGATAACAGTGATCTTTTTGTATACTGCTGGGTAGGATACTCAAgtgaagctaaaattacattgtCATTTCTTCATATTGACCCACTGATATGTCAAACTAAACCTTCATTATCCCCCACGATGAAATCAGGGAAGGGACTGTGGATCTGTCCCTGGCTGTCCATTAGTCACATGACATCTCAGACAGCAGTAGCCCAATTGACATAACTTGGGAGAATGACGCGTCCTGCCAGAGATCCGGCATGTACAGAATTACACTGATTGGACCAAGGCATTAGCATTAGAAATGAACTTAAAATATGTTAGTTATGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414115 lncRNA upstream 50954 16835835 ~ 16836586 (+) True G2110968
TU2414084 lncRNA upstream 86059 16801279 ~ 16801481 (+) True G2110940
TU2414082 lncRNA upstream 87472 16799420 ~ 16800068 (+) True G2110938
TU2414071 lncRNA upstream 94931 16792388 ~ 16792609 (+) True G2110927
TU2414036 lncRNA upstream 120257 16766994 ~ 16767283 (+) True G2110892
TU2414151 lncRNA downstream 34021 16923288 ~ 16925687 (+) True G2110998
TU2414315 lncRNA downstream 288151 17177418 ~ 17177657 (+) True G2111155
TU2414368 lncRNA downstream 372532 17261799 ~ 17265127 (+) True G2111203
TU2414400 lncRNA downstream 416129 17305396 ~ 17306544 (+) True G2111232
TU2414625 lncRNA downstream 790455 17679722 ~ 17680022 (+) True G2111444
XM_021589308.2 mRNA upstream 48257 16824259 ~ 16839283 (+) False LOC110508640
XM_021589305.2 mRNA upstream 48257 16825012 ~ 16839283 (+) False LOC110508640
XM_021589307.2 mRNA upstream 48257 16825015 ~ 16839283 (+) False LOC110508640
XM_021589306.2 mRNA upstream 48257 16825492 ~ 16839283 (+) False LOC110508640
XM_021589304.2 mRNA upstream 48257 16828494 ~ 16839283 (+) True LOC110508640
XM_021589309.2 mRNA downstream 12624 16901891 ~ 16921869 (+) False ss18
XM_021589310.2 mRNA downstream 12624 16901891 ~ 16921869 (+) False ss18
XM_021589311.2 mRNA downstream 12624 16901891 ~ 16921869 (+) False ss18
XM_021589313.2 mRNA downstream 12624 16901891 ~ 16921869 (+) False ss18
XM_021589312.2 mRNA downstream 12625 16901892 ~ 16921869 (+) False ss18
TU2414093 other upstream 74744 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 439038 16448112 ~ 16448502 (+) True G2110507
TU2413068 other upstream 938679 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 948683 15938511 ~ 15938857 (+) True G2109948
TU2409894 other upstream 2974313 13911427 ~ 13913227 (+) True G2107033
TU2414198 other downstream 64517 16953784 ~ 16958852 (+) True G2111044
TU2414472 other downstream 521877 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 818989 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 865670 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 1013931 17903198 ~ 17903924 (+) True G2112127

Expression Profile