RNA id: TU2414151


Basic Information

Item Value
RNA id TU2414151
length 2155
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2110998
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16923288 ~ 16925687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaacgtttgacctctgtcattgccaacaaaggatcctctcatgctttgtcaggttggatggggagtgtcgctgcacagctattttcaggtctccagagatgtttgatcgggttcaactccaggctctggctgagccactcaatgACTTTGAGACCTGTCCAGAATCCACTCCTGtcttgtgcttagggtcgttgtcctgttggaaggtgaaccttctgcCCAGtattgaggtcctgagcgctctggagcaggttttcatcaaggatctctgtactttgctccattcatctttccctcgatcctgattagtctaccagtccctgctgctgaaaaacatcccgacatgatgctgccaggtttcctccagatgtgacgcttggcattcaggccaatgagttcaatcttggtttcatcagaccagagaatcttaaatcctttaggtgccttttggcaaattccaagcgggctgctgtgccttttactgaggagtggcttccttctgaccactaccataaaggcctgcttggtggtgagctacagagatggttgtcctcctggaacattctcccatctccacagaggaactctggagctctgtcagaatgaccattgggttcttaggcacctccctgaccaaggtccttctctcccgattgctcagctctatgaagagtcttggtggttccaaacttccatttaagaatggaggccactgtgttcttggggaccttcaatgatgcagaaatgtctcagctctacggacaattgcttctaccttatggcttggtttttgctctaacatgcactgtcaactgtaggaccttacttagacatgtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgcagaaacatctcaatgatgatcaatggaaacaggatgcacctgagctcaatctcGAGTCcagtagcaaagggtctgagtagttatgtaaatagggtatttctgtaaaaaaaaaaaaaaaacaatttgcaAATGTttattaaaaacctgttttctctttttaattatggggtattgtgtgtagattgagtttttattttattaaatccattttagcataaggttgtaacgttacaaaatatggaaaaagtgaaggtgtgtaaatactttccgaatgcactgtatgtatgtaaaaCCGCGCTGAGCCCAAACTCGTAAAGTGTCTGTTTAGGATAGCTGATTTGCGATCAGTTTTTACTTGGCGATCACAGTGTGAAGGACTACATGGACccaagatcagcactcctactctgagacgctttatgaataggGCACCTGAATGCTTCCAATGCCCCCTGCTACTCCTAAAGGTTAAAGTCAGTAGCATCTACAGTATCTGTTGTCAGAATATGGCCTTGACGCTTCAGTGTGCTCTGTTATTGGACAGCTGGTTAAGAGCTTTATTCAGTTGGGCGAAATTCCAAACATATGTCTTAATGTACATCCGACACAGATCTCTGTTCCATGTGATGGAGAATAGTGTCTGCTCGATACATAACATTTTTTATTTGCAACTTTATGAACATTATGTCCATACTGAATATTCCCATTATGGGTCTGGGGGAGTGCTTTGACCACAGACTGTCCAATCAGACTCACTCGTACATTCAGTATAATCAGTCCCACATAAGATTATTTCAGTCTGATGGagtcttctttacaatgacgtaAGCCATTTCCCCCCCAGAATAAACGTGTAATTCAAATTGTCATGTTGTACGTTACCACCAACCGAATGTGAGTTAGGTACAATATCACATGAAACACTCAGAGGGAGTGTGTTGTGAGGCTTTGAGATACATTTCCATTAATGTCATGCAGCATCTTACGCTTGTACAGACTAGTTGTGTTATTCTATTAAACCTTGGGCTTGATACACTATTACTACATGGACACCATTCACATGTTACAGAGAAGAGAAGTATATCATTGATTTCCAGTCAGCCTCAAAGATACTAACCTTGGTATACTGTAGTACATATCTTGTAATTAATGTTTTGTTTTTCATTCAGCACCCTGTAGCCAATATGATGGGGTTGTTACTGTAAGTGTCACTGTGATGTTAAATGGTACAGTATGTCACTGGAAAAACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414155 lncRNA upstream 34021 16887540 ~ 16889267 (+) True G2111002
TU2414115 lncRNA upstream 86702 16835835 ~ 16836586 (+) True G2110968
TU2414084 lncRNA upstream 121807 16801279 ~ 16801481 (+) True G2110940
TU2414082 lncRNA upstream 123220 16799420 ~ 16800068 (+) True G2110938
TU2414071 lncRNA upstream 130679 16792388 ~ 16792609 (+) True G2110927
TU2414315 lncRNA downstream 251731 17177418 ~ 17177657 (+) True G2111155
TU2414368 lncRNA downstream 336112 17261799 ~ 17265127 (+) True G2111203
TU2414400 lncRNA downstream 379709 17305396 ~ 17306544 (+) True G2111232
TU2414625 lncRNA downstream 754035 17679722 ~ 17680022 (+) True G2111444
TU2414624 lncRNA downstream 754858 17680545 ~ 17680793 (+) True G2111443
XM_021589309.2 mRNA upstream 1419 16901891 ~ 16921869 (+) False ss18
XM_021589310.2 mRNA upstream 1419 16901891 ~ 16921869 (+) False ss18
XM_021589311.2 mRNA upstream 1419 16901891 ~ 16921869 (+) False ss18
XM_021589313.2 mRNA upstream 1419 16901891 ~ 16921869 (+) False ss18
XM_021589312.2 mRNA upstream 1419 16901892 ~ 16921869 (+) False ss18
XM_021589322.2 mRNA downstream 84838 17010525 ~ 17154942 (+) False LOC110508645
XM_036967105.1 mRNA downstream 84838 17010525 ~ 17154942 (+) False LOC110508645
XM_036967103.1 mRNA downstream 84908 17010595 ~ 17154942 (+) False LOC110508645
XM_036967104.1 mRNA downstream 84908 17010595 ~ 17154942 (+) False LOC110508645
XM_021589321.2 mRNA downstream 85025 17010712 ~ 17154942 (+) True LOC110508645
TU2414093 other upstream 110492 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 474786 16448112 ~ 16448502 (+) True G2110507
TU2413068 other upstream 974427 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 984431 15938511 ~ 15938857 (+) True G2109948
TU2409894 other upstream 3010061 13911427 ~ 13913227 (+) True G2107033
TU2414198 other downstream 28097 16953784 ~ 16958852 (+) True G2111044
TU2414472 other downstream 485457 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 782569 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 829250 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 977511 17903198 ~ 17903924 (+) True G2112127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU229188 True 252 lncRNA 0.46 1 NC_056721.1 4048746 ~ 4048997 (+)