RNA id: TU229188


Basic Information

Item Value
RNA id TU229188
length 252
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G154759
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4048746 ~ 4048997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGAGACAGCCTCATGCTGTGGGGAGGTTTTTCAGCCGCGGGGACTGAGAGACTCATCAGAGTAGAAGGAACACTCAGTAAAATATAGAGATACTTTTAAAGGAAACCCAGTCCAGAAACTCAGACTGGGcagaaggttcaccttccaacaggacaatgaccctaaaCACAGCAAGAGTGGCTTATAGACAACTCTTTCAAAGTCCTTGAGTGGTCCAGACACAGAGTGGGATTGAACCCAAACAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229098 lncRNA upstream 160990 3887121 ~ 3887756 (+) True G154712
TU229078 lncRNA upstream 244982 3800350 ~ 3803764 (+) True G154699
TU229073 lncRNA upstream 249462 3797474 ~ 3799284 (+) True G154698
TU229077 lncRNA upstream 249832 3797354 ~ 3798914 (+) False G154698
TU229253 lncRNA downstream 62385 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA downstream 87401 4136398 ~ 4161620 (+) True G154815
TU229284 lncRNA downstream 200322 4249319 ~ 4305432 (+) True G154837
TU229422 lncRNA downstream 502036 4551033 ~ 4553168 (+) True G154934
TU229475 lncRNA downstream 722993 4771990 ~ 4816862 (+) True G154972
XM_043224092.1 mRNA upstream 786 3938707 ~ 4047960 (+) True nav1a
XM_043224944.1 mRNA upstream 165942 3868102 ~ 3882804 (+) True LOC122328889
XM_043225546.1 mRNA upstream 182616 3855092 ~ 3866130 (+) False smpd2a
XM_043225545.1 mRNA upstream 182616 3855093 ~ 3866130 (+) True smpd2a
XM_043225088.1 mRNA upstream 194310 3828588 ~ 3854436 (+) False tead3a
XM_043225374.1 mRNA downstream 3534 4052531 ~ 4059332 (+) True LOC122329177
XM_043224720.1 mRNA downstream 10301 4059298 ~ 4070786 (+) True LOC122328783
XM_043224727.1 mRNA downstream 21799 4070796 ~ 4091301 (+) False mybpha
XM_043224721.1 mRNA downstream 21800 4070797 ~ 4091301 (+) False mybpha
XM_043224722.1 mRNA downstream 21800 4070797 ~ 4090765 (+) True mybpha
TU229052 other upstream 352108 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 352108 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1039136 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1039268 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1092021 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2543609 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3176997 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3250282 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4282744 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4439089 8488086 ~ 8488641 (+) True G155799

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2414151 True 2155 lncRNA 0.42 2 NC_048592.1 16923288 ~ 16925687 (+)
eurasian perch (Perca fluviatilis) TU38791 True 862 lncRNA 0.41 1 NC_053114.1 22753832 ~ 22754693 (-)