RNA id: TU229077


Basic Information

Item Value
RNA id TU229077
length 1561
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G154698
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3797354 ~ 3799284 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgttttatgattttataaagGTTGCGCATCAAATCAATACATACTGCATAATCTGTATGATAACTCTTATAAATCAActcttagaaaaataaaaatataatcaaaaaggCAAAGGATTATTGAACAAAGCTATTTTATTCATAGACCAAACCATATTATGCATACTATTTTTCATTCATCGAAATGCCACATGCATTGTCTGATTGAAACTGAACTTCCTGTCATGATGTGTGAAAATCCTGTTTGATCACGAGCCAACAGAAAAGCTAAATTATTGATTAAGCCATAAATCTGAGCTCTGCAAATCCCttttaatcagatttttctCTTCATATGTAATACTAGATCAGCAAGTTAAGCTGGCAGGGGATGTTGTTCAGGCTTGTTAGGTAAAGagttcacaaaacacacacacacacacacacaaagccgTAAGAGTCTCGTTGTGCTTTCACACTCGCAGCTCTTCTGCTGCTGGATTCTCAGCATCATCACCCCAGTCTTCAGCGTGACacgttccttcagaaatcatgttaaTATATGTTGTGCAAAAGACATTCCTTCTTATTATCGATTGTAAAAAGGAAGGATTTTTGCAAAGTTACTGAATCAAACGGACACTATTGGAGcgcattatataatatttctactGCAAAATTGTACGTTTAATTGAATGTGAGATTTCTTTTGTATCTAACTGTGAAacttactagcaatttctgataGACAATAGTTTCTACATGCTTCAGGATTCTCAGACGAGCAGAAAAAGAAGCGGGGCGAGCATTTATGTTAGAGAAATCATTTGTAAGTTTGGATTGTTAAAATGCATCTTAGctgaaattcatttaaaaaaacgtactGTCCCCAAACCTTTTAAATCATAGTGTAAATTACATGACCTTTACaaccaaatatttattaatctatgCAGGACATAACCAAAAAGCATTAAGTGCGGATAAACTGCTTAACTTCGTCTTGATTCAGTCTTTTCCTGCTTCAAAAAAGGCTATGCCGCAAATTACTGTTGATAAATAGGTCTGTAGGGCATTTTCGCCATATTTTGCGACGACTACAGTATCCGTTGCTGTGTATGCAGACAGCGTAAATGTTGCCTCCTGAAAACATGGATGCTGAAATAAGCACGCTGTTTGCACGCTGTGGTTATATTCATAGTTCATGCGGTGTGAAGCAGGCCGTAAAGTTTAAGCAATATTTAAGCTCCAGGATTTTCCACTAGCTGGCAGACAGCTGGCACAACAAGGAAGGCAATAGACTGTATAGTTATCACCTGAACAGGGTTTGATCCCTCCCACCAAACTATACAACCTACTACCTCACCCTGTCAAGACACCAAAGGGCAATCCCATCGCCTGACACGCTTGCGTACGTATGAAGTCAACATGACACGTCAATCCCAACCCTGTAACGTGAGCGATCATCCTCACTGGATGAATGCAGGCACTTGTTTGTGGATGTTTTGGCTGTCGCCTTAGGAAAGACAGTAGATTGTATAGTTATCTCAATGAGAGAGCGCAGGGCTCCACAACTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229062 lncRNA upstream 68544 3699109 ~ 3728810 (+) True G154690
XR_006247817.1 lncRNA upstream 111246 3678763 ~ 3686108 (+) False LOC122328634
TU229049 lncRNA upstream 114574 3678719 ~ 3682780 (+) True LOC122328634
TU229041 lncRNA upstream 139949 3657099 ~ 3657405 (+) True G154673
TU229035 lncRNA upstream 156673 3639863 ~ 3640681 (+) True G154667
TU229078 lncRNA downstream 1436 3800350 ~ 3803764 (+) True G154699
TU229098 lncRNA downstream 88207 3887121 ~ 3887756 (+) True G154712
TU229188 lncRNA downstream 249832 4048746 ~ 4048997 (+) True G154759
TU229253 lncRNA downstream 312468 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA downstream 337484 4136398 ~ 4161620 (+) True G154815
XM_043224008.1 mRNA upstream 98393 3697205 ~ 3698961 (+) True LOC122328357
XM_043224010.1 mRNA upstream 100332 3694700 ~ 3697022 (+) True ube2t
XM_043225373.1 mRNA upstream 103373 3691282 ~ 3693981 (+) True LOC122329176
XM_043224433.1 mRNA upstream 123762 3669328 ~ 3673592 (+) False LOC122328631
XM_043224236.1 mRNA downstream 18318 3817232 ~ 3826580 (+) True tulp1a
XM_043225089.1 mRNA downstream 29673 3828587 ~ 3854436 (+) True tead3a
XM_043225090.1 mRNA downstream 29673 3828587 ~ 3854436 (+) False tead3a
XM_043225091.1 mRNA downstream 29674 3828588 ~ 3854436 (+) False tead3a
XM_043225088.1 mRNA downstream 29674 3828588 ~ 3854436 (+) False tead3a
TU229052 other upstream 100716 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 100716 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 787744 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 787876 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 840629 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2793692 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3427080 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3500365 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4532827 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4689172 8488086 ~ 8488641 (+) True G155799

Expression Profile