RNA id: XM_043225088.1


Basic Information

Item Value
RNA id XM_043225088.1
length 3977
RNA type mRNA
GC content 0.48
exon number 13
gene id tead3a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3828587 ~ 3854436 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCTCCGCTCGGTTTCGCCGTGATTTCATACCGAAGTCATACTTCACATTCCAGCTTTACTGTCAAATCAGGAGAaatatttcttcaaaaacagCAGCGTGGTTTGCATTTGTAAATGCGCTAATGAGATAAAGCCCGAAATCCCCTTTTGCCCGCTGTACAGCAGAGGTTTGCGTATAAGTCCTGGGTGTGAGGGCTCACGTAGGGGCCCAGGTGGAGCCGCCACCATTGCAGCCAACGAGTGGAGCACCAGCGAGAGCCCAGAGGAGGGGCCGGAGGATGGAGTGGATGGGATGGACAAGGCCGGGATGGACGGCGATGCGGAGGGCGTCTGGAGCCCTGACATCGAACAGAGTTTCCAGGAGGCTCTGGCCATTTATCCCCCCTGCGGCCGCAGAAAGATCATCCTTTCAGACGAAGGCAAGATGTATGGTCGTAATGAGCTGATAGCAAGATACATCAAATTGCGGACTGGAAAGACCCGCACACGAAAGCAGGTGTCTAGTCATCTGCAGGTTCTTGCGTGGAGAAAGTCTCGCGAGATTCAGTCTAAGCTGAAGGCCATGAACTTGGATCAGGCCTCCAAAGACAAAGCCCTGCAGAACATGGCCGCCCTTTCCTCCGCTCAGATCGTTTCTGCCAGCGTGATGAAGAGCCAGCTGCCTCCTCTCCCTCAGCACCCCTATCCTCCTCCAGCCCGGTTTTGGCCTGGCCCCATCCCAGGACAGCCTGGACCTTCTCAGGACATCAAGCCGTTCGCACCGAGTCCGTACTCCACCCTTCAACCTCCGCTGCCCGCACCCATATCGAGTTATGAGCAGTTACCCGCTCCGCACCCCCCGAGCGCCACTGCTGTGCCTGTGTGGCAGGACCGGACCATAGCCTCCTCTAAACTGCGCATGCTGGAGTACTCGGCCTTCATGGAGGTCCAGAGAGACCCTGACACTTACAGCAAGCACCTGTTCGTCCACATCGCCCAGACGAACCCCTCGTACACAGACCCTCTCCTGGAGGCCGTGGACATCCGTCAGATCTACGACAAGTTCCCAGAGAAGAAGGGAGGGCTGAAGGAGCTGTACGAGAAAGGCCCACAGAACGCCTTCTTCCTGGTCAAATTCtggGCCGATCTGAACAGCAGTAATGTTCAGGACGGCGCAGGGTCTTTCTACGGGGTCAGCAGTCAGTACAGCAGCGCGGAAAACATGACCATCACCGTCTCCACTAAAGTCTGTTCTTTTGGGAAACAGGTGGTGGAGAAAGTTGAGACGGAGTACGCGCGCGTGGAGGGCGGCAGGTACGTGTACCGGATCCACCGCTCGCCCATGTGCGAGTACATGATCAACTTCATCCACAAACTCAAACACCTGCCAGAGAAGTACATGATGAACAGCGTCCTGGAGAACTTCACTATACTGCAGGTCGTCACGAACAGAGACACGCAAGAGACTCTGCTCTGCATAGCCTTCGTGTTCGAGGTGTCCACAAGCGACCACGGGGCCCAGTACCACGTTTACAGACTCGTCAAGGACTGAACGCCCTTCATCCGGTGAGGAGGAGAACATCAGACTGGGCCGGAGCTCACGAACGCAATCAATCACgggacaaaaacacaaaccGGGATCCTCCGCGCTCGGTTGCGTCGCACATGCAGCCGTGTTCCTTAAAAGCAAAGGACATGTACTTTCAGGGATAATTCTGtttcttactgttttttttttcgcggAGGGCGAACTCTGTCACGTTTATGGTACCGGACTCTGAAGAGGCGCGAAGGTGTTTTTAAAAGCCGCGGATAAGAAAGGAACGGCGGTCGATGCAAGTCTTTCTCCTCGTCTTTGGTTCGGACGCAGCGGCtcgctgacctctgaccttcgACGGGCCAGCGAGAGCGTAGGAAAGAGACGCTGAATGTTTGTCGCGATGGGAAGAGCAAGTTGCAAAGGAGTTCGGGTCCGTGAACGTCGCGCGCTTTCGCGAGTTTGACCTCGGATTTGGcttgattttctgtttttggaaAGTTGCAAATGTGTGAGCTATTTCTACCTCCTGGGTGTGTTTGGGAGCCTGTGTCCACCACGCCTCGTTCGGGCAGTTCTGCGCTCACCTCTCGCTAGTCGGACTTTGTTTCTTGTCGTTTTTAAGAGggggaaatctttttttttttttttttttaatgcgcgAGCTCACAATTGCTAGCTCGCGACTAGATATAAACTCGTGATTCTGAGAAGAAAGGCCAGAACTGAGATATAAACTTGTTTTATTCTGtagcaggaaaaaaataataattttagcatAGTCGTTTCTGCGAGAAAATGTCAGAGCTgcgaaatgtaaaaataagggagtttatatcttacatttatgtttttacgcCTCACAAATTGTCATAGAATTTCTAGAAAAGAGATTTTAAAttgccttttctttctttcagtagccaaaaaataaataaaaaattgcaagatgtaaaatctgaattataatataaatgcatcgTTTTGAGATATGAACTCGTGAATTATTGGAATTGCGAGGAAAGATATCTCGTGATTACGTTTTTGTCCCAggctttttctcagaatttcgACAAAAAAAAGCGATTAAAAAGTCTTAGTCACCTTTTTTTCGGTAGCAACTGCGAGATAAACGAAGAATTCTGACAATGCGATGAGATAAAAacgtgtgatttaaaaaaaaggtcacgATTAGCTTTATTTTTCCTTCGATTGTCCTGTGGTGGAAACAGGCTTCCTTGGATGCGccaagtgcatttttaaaagcagagtttgggtttaaaaccattttttttgccataatgATTATTGTGAATGTGCATGGTTTTGCTCGATTGCCCTCATTCCGAGCGCCTCACCTGCCTTTCGCCGACCTGGTGAGCGCGCGGGACAGGTCCAGCAGATCGGGTGACCCCGTTTAAAACAAAGAGCGCGTAACGGAGGTTACCGCGGGGCATGTAACGCTCGGTTTTGATTTGTCGGTGTTTCGAATCGGCGAGCTGCACGCTAATTAATTACACCATCACCAAAGCAATTACACTTAACTGGGTGCTCGAGGATGTTCCTAACGGCGTTTTAAAACAAGCGTTTTCATGTAAAACCGGAGCGCGGAAGGTGCGCCGTGAGTCGGCGGAAGGTTTTGAACGGCACAAAGTGAATCAGCTGTTAATTCCGCATCAAAAAGTGCAATAAGATCCGGGCTATTCCGACCCATGTTTTCTCAGGTTCTTTCAGCAATGCAGAAACACTCTCGCTTTATAATGTTAGCACACACAGTATGCGGAGTCACGGTTTCAttactctctcttttttattcttCCACACATGGTATCCATATCGGTGTTTTTTGTTGACCCACAGTCACCTGCGCTGGTTAGTACATATGATTTTAAATGCCAGACGTAATCAGTGAACTATATAAAACGGCTGCAGCTGGTTATTCATGGCATCATGTATCGGTACGTTTATATATAAGACGTTATGGAAAGCACTTGCTGATGTTCTGCATTGTACATTCTCTGCTCGGAACTACTTTTTGTGTGAAGGTTTCTAGACTAATCTGTAATATCTTAACCAAAGAATCGAATGTGAACACCATCCCAGTCTTGCCTTATTGTGTGCTTCGGGTCTTCTGTGacattttaagagaaaaacCTTCTGGAtgagtgtgtgcgcgcgcgtgcgcgtgcgtgtgtgcctgtgtgtgtgcgcgtgcgtgtgtgcgtgtgagagaagAAACTAGAAATTCATGTTGAAATTCtaattgttttgtgtatattttaagaatgttaCAGGAAAATGGTTTTTATgtctattctttttttcatctttagtttgtttttgcttcGTTTGTTCCAGTATAATTCTTGTTTtggtttatattaaataagGGTTGTAACATCTAGAGCGTTTCATGTTTGTGCTCATTAAAGTGTCTTTCGACCCCTGGAAGCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229078 lncRNA upstream 24824 3800350 ~ 3803764 (+) True G154699
TU229073 lncRNA upstream 29304 3797474 ~ 3799284 (+) True G154698
TU229077 lncRNA upstream 29674 3797354 ~ 3798914 (+) False G154698
TU229098 lncRNA downstream 32685 3887121 ~ 3887756 (+) True G154712
TU229188 lncRNA downstream 194310 4048746 ~ 4048997 (+) True G154759
TU229253 lncRNA downstream 256946 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA downstream 281962 4136398 ~ 4161620 (+) True G154815
TU229284 lncRNA downstream 394883 4249319 ~ 4305432 (+) True G154837
XM_043224236.1 mRNA upstream 2008 3817232 ~ 3826580 (+) True tulp1a
XM_043224008.1 mRNA upstream 129627 3697205 ~ 3698961 (+) True LOC122328357
XM_043224010.1 mRNA upstream 131566 3694700 ~ 3697022 (+) True ube2t
XM_043225373.1 mRNA upstream 134607 3691282 ~ 3693981 (+) True LOC122329176
XM_043224435.1 mRNA upstream 154996 3669328 ~ 3673592 (+) False LOC122328631
XM_043225546.1 mRNA downstream 656 3855092 ~ 3866130 (+) False smpd2a
XM_043225545.1 mRNA downstream 657 3855093 ~ 3866130 (+) True smpd2a
XM_043224944.1 mRNA downstream 13666 3868102 ~ 3882804 (+) True LOC122328889
XM_043224092.1 mRNA downstream 84271 3938707 ~ 4047960 (+) True nav1a
XM_043225374.1 mRNA downstream 198095 4052531 ~ 4059332 (+) True LOC122329177
TU229052 other upstream 131950 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 131950 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 818978 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 819110 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 871863 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2738170 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3371558 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3444843 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4477305 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4633650 8488086 ~ 8488641 (+) True G155799

Expression Profile