RNA id: XM_043225546.1


Basic Information

Item Value
RNA id XM_043225546.1
length 1939
RNA type mRNA
GC content 0.52
exon number 11
gene id smpd2a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3855092 ~ 3866130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCGTGTCATGCGCAGGAGCCGCACTGTGCCGCGTAACGTTAGGCGATACAGTGGATACAGTGGAGGTCATTTGACGGGACGATGATGATTATCGATCGGTCAGCGAGGGACAGCTGTCACGCGCTCGCAAAGAGCGCGAGCGGAACGCACGCGGAGCATCGATCCGAGGGCCAGTCCCATGCAGTTTGAAGCCCCGCCTCCAGAGCCGGACTTTAAAGCGCTCGCCGCTCTCGGACTGACGGACTGAAGCTCGAGCCGCGCGGCGCCATGGCAACAGAGCGGCCCTCCGGACTGCGCGTCTTCTCTCTCAACTGCTGGGGAATCCGATTCTTCAGTCAACTCTGTACACAGCGGTACGAGATGATCGGAGAACTACTGGGCCGAGAGCAGCACGACATCGCCCTGTTACAGGAAGTATGGAGTGAAAGAGATTTCCTTTTCCTGAAGAGAAAGCTGTCTTCCTCTCATCCTCATACTCATTATTTCAAGAGTGGGGTCATTGGCAGTGGGCTTGCTGTGTTCTCCAGACACACGATCCAGGACGCGCTGCTCTATCAGTACTCTCTTAATGGCTACCCATATATGCTCCGTCATGGCGACTGGTTTGGAGGCAAAGCAGTTGGATTGGTCATCGTAGACGTTTCTGGATTAAAGGCACACATCTATGTTACTCACTTACATGCAGAGTACTCCAGGGCTCAAGATGAATACCTTCCCCACAGAATAGTGCAGTCGTGGGAACTGTTGCAGTTCGTGCGCCACACGTCCCGTGGAGCGGATCTGGTGGTTCTGGGAGGGGACCTGAACATGCATCCTCAGGACCTGGGAAACCGTCTCCTCAGATCCCTCACTGGCCTCAGAGACTGCTATAGTGAAACAGACACGTTTGATGGCTGTGAAGACGGTCACACGCTAATAGCAGACAATCAGTTCACAAAGAAGCAAGATCTTATTCCTTTCGAGAAGGGCATCAGGATTGACTACATTCTCATGAAGgGCTCTCAGAGAGTGAACATGAAATGTGAGTCTCTTTCCACCACCAAGGGTTCAGTGGCTGATAAACCCTTTCCATATTCTGACCACGAGGCTCTGACTGCTGACCTGACCCTGCTGCGCTCCGAGGACAGCAGACAGCGTGGATCAGACACACTGGCTGCATCGGAGCAGATGGACGTGGTCACAGAGGCACGTGCGCTGGTGAAAGAAGGCCTGTGTCAGACCGAGGCCCTGCGGGACAAAGCCATGTGTCTGATGTTCGGCGCTCTGCTGATACTGCTGCTGCCGCTGGCTGTGGCCTTCCTGCCCTGCTCCTGCTCCTGCTCCTTCAGCACCATGGGGCTTCTGGGAGCCGTTTGCATGGCCCTGCTCCTCTCTGGAGCTCTGCTCTACCTGCTCTTCACCACACACATCAAAGTCCTGAAAGAGACTGAAGACCAGATGACGCTGACCTCTCGTGACCTCCAGACTAAACTGACGGGATGTCAACTGTCTGGATCTTCATCCTCCGATGGTTCTCCAGAGATCCAGCCGCTGGGTCCTTTTAAACGGGAGGAGTAAGGTTGACCCATAAGAGCTGGTCCTGGATCAGGTTACTGTACCTCAGTGTTACACAATAGCTGTTAGGATATGACTTGAAGGAGCTGATCCGAGATCAGTGCTCTGAGGCTATACCTACCTCAATAGACAAGATAAATCATTGTGGAGCTACTGCTCTTTGCGTTTCAACGAACTGTAAATCTTGAAGGCTGGAAAGGAAAGCCCTGTTTGTTTCCACGAGGGCGAGTAATTTAATTCTGTGCTTGTCTATGCTTGTAAAGACACAGTGTGCTTTCTGATATTTTGTTGAGGTACTACTAGACCACGTTTTAGGCATTATAATCACCGTTTGAATGTCACTTCGTCATaatcatgaataaaacaatCACTATTCTGaagca

Function

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0006684 sphingomyelin metabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229078 lncRNA upstream 51328 3800350 ~ 3803764 (+) True G154699
TU229073 lncRNA upstream 55808 3797474 ~ 3799284 (+) True G154698
TU229077 lncRNA upstream 56178 3797354 ~ 3798914 (+) False G154698
TU229098 lncRNA downstream 20991 3887121 ~ 3887756 (+) True G154712
TU229188 lncRNA downstream 182616 4048746 ~ 4048997 (+) True G154759
TU229253 lncRNA downstream 245252 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA downstream 270268 4136398 ~ 4161620 (+) True G154815
TU229284 lncRNA downstream 383189 4249319 ~ 4305432 (+) True G154837
XM_043225089.1 mRNA upstream 656 3828587 ~ 3854436 (+) True tead3a
XM_043225090.1 mRNA upstream 656 3828587 ~ 3854436 (+) False tead3a
XM_043225091.1 mRNA upstream 656 3828588 ~ 3854436 (+) False tead3a
XM_043225088.1 mRNA upstream 656 3828588 ~ 3854436 (+) False tead3a
XM_043225092.1 mRNA upstream 656 3828588 ~ 3854436 (+) False tead3a
XM_043224944.1 mRNA downstream 1972 3868102 ~ 3882804 (+) True LOC122328889
XM_043224092.1 mRNA downstream 72577 3938707 ~ 4047960 (+) True nav1a
XM_043225374.1 mRNA downstream 186401 4052531 ~ 4059332 (+) True LOC122329177
XM_043224720.1 mRNA downstream 193168 4059298 ~ 4070786 (+) True LOC122328783
XM_043224727.1 mRNA downstream 204666 4070796 ~ 4091301 (+) False mybpha
TU229052 other upstream 158454 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 158454 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 845482 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 845614 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 898367 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2726476 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3359864 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3433149 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4465611 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4621956 8488086 ~ 8488641 (+) True G155799

Expression Profile