RNA id: XM_043224944.1


Basic Information

Item Value
RNA id XM_043224944.1
length 3504
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC122328889
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3868102 ~ 3882804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGACTCTCAGTACACACGCAGTGTCGTGGGGCTTGGCCGTAGGTGCGAGCTGAACCACCGAGAGCAGCGATGACCGCCGAGCCGATTCGCTCGGCTCTGGGCACCGACTCGATGGAGGACACCTCTCTGGTGCTGCCCTCCGACAAACACCAGCGGACGGGGAAGCAGCGCGTCCTGGAGCAGGTGAACACCATAAAGAGAAGCAAGTCGAAGATGGTCAAGAACGACTCCGTTCCGACTCCAACGACTCCGGCGTCGGCGACCGAATACAGCGAGCCTAAATTCCAGTTCTCACCTACAAAACTGAACGACACGCTCTTCAAATTCAGCGGCTCCAACGTGACGAGCAGCCGCAGCGCGACCGGTCGCAGCTTGTCTGTGCGCAACATGGTGAGAAGACAGACCCAGAACAGCCAGTGGGAGTCGCAGATGACCTGGAAAACACAGTCTCAGTCCAACGGGATGAGACGCGGTGACAGCGACCCGACCTTGAACAAGGCAGGCGGCACGGTTACCAAGCAGCCCAAGATGAGGTCTTACACTGTGCGAAGTAACCGAGCGTCTGGACAATCCATGAGACTCCTAGAGAATAATCTGCATGCCAGCACCATCCAGTCACGGGCCGCAAGCGCCAGACCTTCCCTCAACCAATCACAGACCATCACAAAAGTCACCTCCACCAAGAACAGATCGGAAGCGCTGGGTGCGAGTGGTGCCGAGGGCTCTTTTTCTAACATCACTATGGAGAAGGCCGTGGAGTATCTGTCGCAGGCGGACGTCAATCTTCAGCTGACCGGAGCTTCATTCATACAGCACCACACCTTCACCGAAGACAGCGCCAAACAAGAGgtttggCGTTTGGGTGGGATTCCTGCTCTTATTCAGCTGCTGAAAAGCGACAATCTACAGCTTCAGCAGGCCGCTGCCGCTACGCTGCGCAACTTAGTCTTCAAAGACAACAATAACAAGCTTGAAGTGGAACGCTGTGAAGGAATAGAAGCCGTCCTGACCTTGTTCAGAAACACCACCGTCatagaaacacagaaacagcTCACTGGTCTGTTGTGGAATCTGTCCTCGGCTGATGAGCTGAAGCCCGAGCTGATCAAGACCGCCCTGCCGCTGCTCACAGAAAGTGTCGTGGTGCCTTACAACTTCTGGACTAACAAACACATCGACTCCGAGGTCTTCTACAACACCACTGGCTGTTTAAGGAACCTCAGCTGTGCTAGTGATCAGGAGAGGATACTGATGAGGAGCTGCCCGGGACTCATCGACTCTCTCGTGACTTACGTTCAGAATCAACTGGATAGCGGCGATCAGGATGACAAGtcGGTGGAAAACTGCGTCTGCATCCTTCATAACTTGAGTTACCAGCTGGAGAAAGAGGCTCCGGATCACTTCTCACAGTTCGCCGTTCCTGACGAGAAACCGAACGAgaacaataacaaaaagagCCTCTTCAGCCCCAAGAGCACCAAGACACAAAAGGACTTCATCTTCCCAGCCATGGACAAGGAGGATCCTGAAGGAGTGGCGTGGTTGTACAACCAGAAGTCTCTGCAGATGTACCTGTCTCTGCTGGCCTGCGGTCAGAAGGAGGCCACTCTGGAGGCGTGCTGCGGAGCCCTGCAGAACCTGACCGCTTCAAAGAGCCCCTTGTCCACTCTGATGAGCCAAAGCATCATACAGAAGCGGGGAGGCCTGTCTGCCATTTCACACCTGCTGAAAGCTAAAAACCCGAGCCTGCAGAAGACCGCCATGTCCCTAGTGGGCAACATGTCCCGGGTGACTTCTCTGAGGGGGGATATAGCCCAGAAAATTCTTCCCGACGTCAGTACTGTTCTGTCGGCTGTGACGCCGAACATGGCCGGCTCGGACAGCAGCCTTGCTACAGCGTGCCGCGTGATGAACACACTCATGCTGGCAGATCCGGTCACCGGCAAGAAAGTGATCAACGCCACGCTCGTCGACTCTCTAATCATGCTGAGCAAAAATGTATCATTCGATTCGGCCAGAAAAGCTGCCGGAGTTCTTCTCTACAGTATGTGGGGACAAAAAGACATCCAGAGCGTGCTGAAAAAGCAAGGGCTGAACAAGGACATGTTTATAAATGACGTCACCGCTACGGCGTACAAGACGGCCACTAACCTGAACGGACACTGAGACGCGTGCAAgGTTTCTGAACTCAGCACGGGTCGCGTGGAtgcttttatgatattttaatgggATGTTTTTGATTTTAGAGCTTGGCATCcgctaatgtaaaaaaatcaagTGATCGATGACTCTGGTAAAATCCGTCTTTCTCCAGGTTTAACGTCTGATGTACCTGTTTGATGCCTGATGCTCTATCATGGGAAAGGTTTTCTACACAAACTTGCACTACTGGTCCTGCGGAGTCTTATTTCCACTCTTCTTCTGCTGCTTTCCTTCCCCTGTCCTCCTGTGCGGTGTATTCAAACATATCAGTCCTATCGGGGATCGTAATGAGGCCTGAATGTTTGTCGGTTTCTAAACACGCTTTATTTCTTCATGTCCACTTAAGTTGTTCTGAGCTCGCGTTATTAATGACAACCAGAAAACGCACTAAAAACCTTCATATAAGTtgtattaatgttgaaaaaatgttaatactaATGTAAAATGGTATACACAATTCTTAGGCATCaaagtgtacattttaacaAGATTGCGCAAAAAGTAAGATTATGatattgttgatttgatttgaaaaaaaaaaaaaaaaaaagatttattagttttaattgaaCTTAGCATTGGCAGTTCTGGATCTCATCGTCTTCAACCTAAGTGAACCTTAAACTTTGAAGTACTCGTGGCAATATCTGTCGTTTCTGTTTTACATCGTTAGCCACACATAATTctactgtaaatacattatatGAAAAGGACTATGCAGTCGAGTGGCATGCAGCTTTAGATGTGGCTCATGTTCGTTTTTGACAGCGTAAAGATGTCTTTGGTTTTTTGGGTACGGTTGTGTTTGAGGCAGAGCTGGACGCATTCACatggatgaaaaacaaaattacatttttgttcgTCAACAGGCTGCTTAGAGCAGTAAATGAAAAGTGAATTAATTTCCagatatacagtaatatattttgattgaccttttttctttctttttaaccaAACTTGCCTTTTTGTGTGCTGTTTGCTGAATGTCtgtgattattatattttgtgaatattattCTTATTGGACGTTTGTTCTGCTGGAGTGTGTTTGAAATGCTTGTGGgagatcttttttcttttttttttctttttttttcattttattaatgttttcagaAAAGCTAAATGGATACAGACAAGCGGAACATTTACATACTAAAAgtgataatatttttgtattaaaaaaaaatgttgctgtGTACAATTACATTTAGCATCTGCAAGACcaataatgtgctttttttttaatcttgcgtaggaatgcatttttaaaataaatgtgcaattcAAGAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229078 lncRNA upstream 64338 3800350 ~ 3803764 (+) True G154699
TU229073 lncRNA upstream 68818 3797474 ~ 3799284 (+) True G154698
TU229077 lncRNA upstream 69188 3797354 ~ 3798914 (+) False G154698
TU229098 lncRNA downstream 4317 3887121 ~ 3887756 (+) True G154712
TU229188 lncRNA downstream 165942 4048746 ~ 4048997 (+) True G154759
TU229253 lncRNA downstream 228578 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA downstream 253594 4136398 ~ 4161620 (+) True G154815
TU229284 lncRNA downstream 366515 4249319 ~ 4305432 (+) True G154837
XM_043225546.1 mRNA upstream 1972 3855092 ~ 3866130 (+) False smpd2a
XM_043225545.1 mRNA upstream 1972 3855093 ~ 3866130 (+) True smpd2a
XM_043225089.1 mRNA upstream 13666 3828587 ~ 3854436 (+) True tead3a
XM_043224092.1 mRNA downstream 55903 3938707 ~ 4047960 (+) True nav1a
XM_043225374.1 mRNA downstream 169727 4052531 ~ 4059332 (+) True LOC122329177
XM_043224720.1 mRNA downstream 176494 4059298 ~ 4070786 (+) True LOC122328783
XM_043224727.1 mRNA downstream 187992 4070796 ~ 4091301 (+) False mybpha
XM_043224721.1 mRNA downstream 187993 4070797 ~ 4091301 (+) False mybpha
TU229052 other upstream 171464 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 171464 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 858492 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 858624 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 911377 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2709802 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3343190 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3416475 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4448937 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4605282 8488086 ~ 8488641 (+) True G155799

Expression Profile