tulp1a (LOC107559175,LOC107697025)


Basic Information

Item Value
gene id tulp1a
gene name LOC107559175,LOC107697025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3817232 ~ 3826580 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224236.1
GCTCCTGAGGCAGATGGGCTTTACACCGAATCCTATTATCAAGCTCTCTGGACTCAACTAGCCTTCGTAATCAGCCACACTGACGCCCTCAGCGCACtctcatataaacacacatgagCGCTTCATCCGCTCTCTTGCCTGGACTTTTACTATCGAACCGATGTCATCTCGATAACCATGTCTTCAGAGAAGTGCAgaagacaaaaaagaagaagcctGAGGCGGATTCTGGAAAGGCCAAGGGAACTGAAGCCAAACCCAAAAAGAGCAAAGCTAAAAAGAGTGAAGAGCTGTCAGGAGATGAGGACAGCACGCCCTCAAAGACAGAAAGCAAAGCggtaaagaagaagaaaaccgAGAAGGACAAAGAAGCATCAGAGAAGAACACAAAAAAGAAGGCCAAGAGCACTCCTAAGAAGAAGAAAGAATCCGATGATGAGGATGACGAGGATGACGAAGAGGAGACCTCACAgaagaaaactaaaaagaaaaccacCAAAGAAAAGAAACCAAAGGCCAAAGAGAGTAAAGGTGAATCAGAAAGCAGAGGAAAGACAGCCAAGGCTAAAAAGGAGCCAGCTTCTATGTTTCAGATAAATGGAGACAAACCAGATTTTATCGCAAAAAAGAAAGCTCCAGTCATCAAGTCTGACAGCGATGAGAGCGAGCCAGAGACTAAACCCAGCAAGAGCAAAAAGAAATCCACCGCCAACTCCACCTCCATGTTTCAGGCTGGAGGAaacaaagacaagaaaaaagaCAAGACTAATAAGGACAAAGAGAAGAACAACAAGAAAAAGAACGCTGCTAAATCTGATGAAAGTGATGATGAGGATATAGAAGTGCCCAGAAAGAAGAAAGGCAAAGGCAGGAAAAGTAAAAAGGAGGAGGAGAGGCCTCCATCACCAGAGATCGAGTTCGATGACCTTGAGGAGTTTGTTCTTCAGCCTGCACCTCAGGGAACCACCATCAAGTGTAAAGTGACGCGAGACAAGCGTGGCATGGACAGGGGCTTCTACCCCACCTACTACCTTCATCTAGACAATGACAAGAAGGTTTTCCTACTGGCTGgtcgaaaaagaaaaaagagtgCGACGTCTAATTATTTGATATCGATAGATGCCACTGACCTGTCGCGAGGCGGAGAAAATTTTATTGGAAAGTTGAGGTCCAATCTCATGGGTACCAAGTTCACAGTGTTTGACAACGGCCTCAACCCTGACCGTGCGCTCAGAGACATGTCTAACGCCCGGCAAGAGCTAGCGGCTATCATTTACGAAACAAATGTGCTGGGGTTTAAAGGGCCCAGAAAAATGACTGTCATCATCCCAGGCATGGATGACGATAATGAGCGAGTGCCGATATGTCCACGAACGGACAACGACAGCATACTCACGCGCTACCAAAACAGACATATGGACAACCTGATTGAACTCCACAACAAAACCCCAGTCTGGAACGACGACACCGCTTCCTACGTCCTCAACTTCTCCGGTCGGGTCACGCAGGCCTCTGTCAAGAACTTCCAGATCGTCCACAGCAAAGACAATAGCTACATTGTGATGCAGTTTGGAAGGGTGGCAGACGACATGTTCACGCTGGACTATAATTACCCCATGTGTGCGGTGCAAGCCTTCGCTATCGCTCTGTCCAGCTTTGACGGCAAACTGGCCTGCGAATGAACACGAGGCACAAGAGTCATATCTCTGAGAGAAACACACGGTAACTTCGCCGTCGGGAAGACGATGAAGTACGACGTGTTATTTGATAATGtgggacatttttatgatttccaCTGTGCCTGAAAGTGACTGGGATGCACTCATCCTGGATACAGAACAGAAACTGACACCAGAGCCAGGCGTCAAACGTACGTCTCTGCATGTATGTGGCTACATAAAATGGCAAAagatttttgattatattttatgttgta

Function

NR:

description
PREDICTED: tubby-related protein 1-like isoform X3

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224236.1 True 1936 mRNA 0.46 13 3817232 3826580

Neighbor

gene id symbol gene type direction distance location
LOC122328357 LOC107559166,LOC107696944,LOC107559158,LOC107746523,LOC107696945 coding upstream 118271 3697205 ~ 3698961 (+)
LOC122329176 LOC107559158,LOC107746523,LOC107559166,LOC107696944,LOC107696945 coding upstream 123251 3691282 ~ 3693981 (+)
LOC122328631 LOC107696966,LOC107746508,LOC107559163 coding upstream 143640 3669197 ~ 3673592 (+)
kcna10a kcna10a,LOC107696967,LOC107746531,LOC107559162,LOC107746341,LOC107673534,LOC107598151 coding upstream 161627 3650109 ~ 3655605 (+)
kcna2b kcna2b,LOC107746332,LOC107711719,LOC107697029,LOC107673029,LOC107566069,LOC107598117,LOC108438074 coding upstream 185467 3628747 ~ 3631765 (+)
tead3a tead3a,LOC107697024,LOC107746506,LOC107707383,LOC107673091,LOC107598123 coding downstream 2007 3828587 ~ 3854436 (+)
smpd2a LOC107696962,LOC107559169,LOC107598121,LOC107673059,LOC107707384 coding downstream 28512 3855092 ~ 3866130 (+)
LOC122328889 LOC107697023 coding downstream 41522 3868102 ~ 3882804 (+)
nav1a nav1a,LOC107673164,LOC107598126,LOC107696940,LOC107746511,LOC107707368 coding downstream 112127 3938707 ~ 4047960 (+)
LOC122329177 NA coding downstream 225951 4052531 ~ 4059332 (+)
G154699 NA non-coding upstream 13468 3800350 ~ 3803764 (+)
G154698 NA non-coding upstream 17948 3797354 ~ 3799284 (+)
G154690 NA non-coding upstream 88422 3699109 ~ 3728810 (+)
LOC122328634 NA non-coding upstream 131124 3678719 ~ 3686108 (+)
G154673 NA non-coding upstream 159827 3657099 ~ 3657405 (+)
G154712 NA non-coding downstream 60541 3887121 ~ 3887756 (+)
G154759 NA non-coding downstream 222166 4048746 ~ 4048997 (+)
G154815 NA non-coding downstream 284802 4111382 ~ 4161620 (+)
G154837 NA non-coding downstream 422739 4249319 ~ 4305432 (+)
G154934 NA non-coding downstream 724453 4551033 ~ 4553168 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 120210 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 720197 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 807215 2995169 ~ 3010017 (+)
G154424 NA other upstream 860507 2923382 ~ 2956725 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 990785 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 2766022 6592602 ~ 6598532 (+)
G155561 NA other downstream 3399414 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 3471780 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 4495125 8321705 ~ 8333376 (+)

Expression


Co-expression Network