RNA id: XR_006247817.1


Basic Information

Item Value
RNA id XR_006247817.1
length 573
lncRNA type inter_gene
GC content 0.57
exon number 5
gene id LOC122328634
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3678719 ~ 3686108 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGGAAACAAGGCGTTCACCAGCCGGATGAAGTTGGTGACGGAGCACTGGAAGGAGAGCTGCTGGATGATGGCGTCGCACAGGATGATGGAGGTGTCTGACGGACAGATGACCATGTCTCCAGCGAACGGGGAGATGACATGCGCGTCATGGAGATGTGCAGACGGCCGCTGGCCAGAGTGTGTGCGTTATCGGGCAGACAGCGCTGCAGCGTGACCTCCAGCCACCGGAAAATATCCACCGCGGGACTGAGAAGACCCAAAGGATGCTGTTTGATCAAAAACCTCAAGACTGGATGAAGCCGGGATCAAAATTTAGATTGGTGCCACAGACGACGGCTGCAGCGACGAGGGAACCAGAAGATGCCCCATAGACCCTCGGAGCTCCTCGCAGGATCCAGGCGGCGTTATCCAGAAGACTCTGCGCCACACCGAGCTGATCACACACCAGAGCTGGGACAGCGGAGACGGAAGTCCTCTTTGGTCAGAAGACAAAGCGCCTTTCCGTTCATCTCAAATTTTTGGTGGTCGGCGCGTCGCAGAGAATATTCCCTCTGAGCCCAGCGCAGCCAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229041 lncRNA upstream 21358 3657099 ~ 3657405 (+) True G154673
TU229035 lncRNA upstream 38082 3639863 ~ 3640681 (+) True G154667
TU229029 lncRNA upstream 42486 3634764 ~ 3636277 (+) True G154661
XR_006247898.1 lncRNA upstream 63919 3608363 ~ 3614844 (+) True LOC122329308
TU229008 lncRNA upstream 77907 3600442 ~ 3600856 (+) True G154647
TU229062 lncRNA downstream 13001 3699109 ~ 3728810 (+) True G154690
TU229074 lncRNA downstream 111246 3797354 ~ 3797927 (+) False G154698
TU229077 lncRNA downstream 111246 3797354 ~ 3798914 (+) False G154698
TU229071 lncRNA downstream 111366 3797474 ~ 3797927 (+) False G154698
TU229073 lncRNA downstream 111366 3797474 ~ 3799284 (+) True G154698
XM_043224434.1 mRNA upstream 5171 3669197 ~ 3673592 (+) False LOC122328631
XM_043224436.1 mRNA upstream 5171 3669328 ~ 3673592 (+) True LOC122328631
XM_043224433.1 mRNA upstream 5171 3669328 ~ 3673592 (+) False LOC122328631
XM_043224435.1 mRNA upstream 5171 3669328 ~ 3673592 (+) False LOC122328631
XM_043224160.1 mRNA upstream 23158 3650109 ~ 3655605 (+) True kcna10a
XM_043225373.1 mRNA downstream 5174 3691282 ~ 3693981 (+) True LOC122329176
XM_043224010.1 mRNA downstream 8592 3694700 ~ 3697022 (+) True ube2t
XM_043224008.1 mRNA downstream 11097 3697205 ~ 3698961 (+) True LOC122328357
XM_043224236.1 mRNA downstream 131124 3817232 ~ 3826580 (+) True tulp1a
XM_043225089.1 mRNA downstream 142479 3828587 ~ 3854436 (+) True tead3a
XR_006247841.1 other upstream 669153 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 669285 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 722038 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 722038 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 727674 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 8544 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 8544 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 2906498 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3539886 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3613171 7299279 ~ 7304358 (+) False tcea2

Expression Profile