RNA id: XM_043224436.1


Basic Information

Item Value
RNA id XM_043224436.1
length 2192
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122328631
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3669197 ~ 3673592 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAATTACACTATACTAAACTAATACTGTAGCGACACGTTTAATAAACAGGACACGAAATGAGCGCGTCTCCGAgtgtaatgtattattatatgtacAAATATTGGGAGATTCAGAAGGTGAGGGCTCTGTCTCAAAACGTACTTGCTGCCTACTTAGACaagcatttgaaaaataaaaaccataacTGTGGATTACGACGTCTAAAGTACCTATGCACTGAAGTAGCGTTAGTCAGCTAGGTTTGGACACAGTCGTGACCTGTACCCAACTTCCGCTTTAACAGATAAGTGGGTAACCTAGctctttattttacagatgtACATACTAAGtacttattatagtaattacaataactaggtactaactCTAAACCTCTGCTCCACCCCATGTAGTACTTTATatgtaagtaaaataaagtgcaactgATAAGCATAGCCTTTCTACTTTTACATTAACTGCTAGGTTCAGATCTCCTCAGAACACAAAACTATCTCATTTTATCGCTAAACATTATTCTGTACACTTTATGAAGTCAAAAAATaccgttttttttatttactgtctATACCCATCTCTTTGGTGGATATGTGCTAAAATAAtcaactaataaataaatgcttattttatttaaactgtcaTTTTAGTTATAAGTCATAACGTATAGAGTGTTTCTTTGGAAACATCAACTAATGTGTTCAACATTTATCTTTGCTATGTTTTGTTCCGTGTCAGTGGAGAtgtaatattttgcaaatatgtGAAAGATGTAGTTTAGGGAGTCTTTGGGAAACTATAAAAGGTTCAGCATTACtcgtattgttttattttatagatactGTGAGGTAAAAGATGTCCAGGCTTTCTTCCCGTAGCTCTCAACTGCTGTTTTCGGACCAAAAGTGTGCTAAATGTCTGTTAGAGGTGTACGTCAAGCGCAGCCTTAGCCTGAATGAAGGATGCAAGAAACATCAGCTAAATAAGCTCAACAGGTTTAAACCGGGAAGGCAGTCCAAACGGGCATCCAGTGACACCTCCACCCACCGTCTGAGAAAAGAGGGGCTCCTGAAGACCGTCGAGTGCCCCGAATGCAGCAGACCCTTACTTCTTGTGAGGAGTAAGAGCCTCAAAGCACCGAGCAGAACCAAATCATTCTTCAGAGGCTTTCTCCAGCTCTTCTCTAAGAAGAAGACCGAGCCCAAAGAGAAAGTTGAACGAGTTACAGAAACCGACTCTGGACAGTGTAGACTACAACGGGGGCTTCGCTCGCCTCACAAAGGCTCACCTGGACACGGTGGGACCCTGAGGAAGAATCACTCTCTGAGAAGGATCTTCTGCAGCAGGCAGAACGACGAGAAAAGAGAGACGTTAGCAAAGGACTCCTCTCTTGTTCTTGGAGGTGCGGAGGGGCTCTCAGATGTGAGCGTGGACTCCGATAATACGTACTTTGAGAAGGTGTCAGAAGAACTGGAGTTGATTGTGAAGGAGATTCAGTGCAGTTCACCAGAAGATGCTCCGCTGCCCTCTGTTGCTTCTCTAGGAGACTGCAGCTCTTCAGGTGTCTCCTCAGGTGATGACACTACAGAGCGGATTATCAGCCTGCTGAAGCAACACGGAGATGCTATCGATCAAAGAATAAACGTGAACAAGAGTGTCCAAGACTTCCTCCAGAAGCTGTCTTACATCTCCTTCCAGCAGCTCGCCGACCGCTACATAGCCCAGATCCCCAGTCCTCTTCCTCAGACCACAGACGCCTCTGCCGAGCTGGTCAGGCTGGCCTTCACCCTGGACTTCACCGCTAAAGTGGCTGGACTGTGCAGCCAGGCGGTCGGCCGAATCATGGGGTTCGGTTACCAGTACCTTCAGGACTCCTTCACGCTAAAGTGCGCGGCCCACAGACAGTAGGTGCCTGAAGACTTGGAACAACAGAGTACAAGTGAAACAGACTGACTGTGAAGGGAAGAGGGGGGACTGTAATAATCCTAGCTGCTTTTGTGAATACGCCAAAGTTAGTcactttttactgtaaaatttatACAGTAACCGACTGTAAAATATACAACCCGATAAGACTAAaactgtgaattttttttttacaccagaTTAGCATATTCTAATGACTTCTGAAAGGTAAtatgatgattttaaaatgtattaaaaaaactattaaatttgAATaccatttcaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229041 lncRNA upstream 11923 3657099 ~ 3657405 (+) True G154673
TU229035 lncRNA upstream 28647 3639863 ~ 3640681 (+) True G154667
TU229029 lncRNA upstream 33051 3634764 ~ 3636277 (+) True G154661
XR_006247898.1 lncRNA upstream 54484 3608363 ~ 3614844 (+) True LOC122329308
TU229008 lncRNA upstream 68472 3600442 ~ 3600856 (+) True G154647
TU229049 lncRNA downstream 5127 3678719 ~ 3682780 (+) True LOC122328634
XR_006247817.1 lncRNA downstream 5171 3678763 ~ 3686108 (+) False LOC122328634
TU229062 lncRNA downstream 25517 3699109 ~ 3728810 (+) True G154690
TU229074 lncRNA downstream 123762 3797354 ~ 3797927 (+) False G154698
TU229077 lncRNA downstream 123762 3797354 ~ 3798914 (+) False G154698
XM_043224160.1 mRNA upstream 13723 3650109 ~ 3655605 (+) True kcna10a
XM_043223992.1 mRNA upstream 37563 3628747 ~ 3631765 (+) True kcna2b
XM_043225539.1 mRNA upstream 60987 3605256 ~ 3608341 (+) True LOC122329307
XM_043224368.1 mRNA upstream 168347 3497006 ~ 3500981 (+) True slc25a55b
XM_043224369.1 mRNA upstream 172432 3494137 ~ 3496896 (+) True LOC122328605
XM_043225373.1 mRNA downstream 17690 3691282 ~ 3693981 (+) True LOC122329176
XM_043224010.1 mRNA downstream 21108 3694700 ~ 3697022 (+) True ube2t
XM_043224008.1 mRNA downstream 23613 3697205 ~ 3698961 (+) True LOC122328357
XM_043224236.1 mRNA downstream 143640 3817232 ~ 3826580 (+) True tulp1a
XM_043225089.1 mRNA downstream 154995 3828587 ~ 3854436 (+) True tead3a
XR_006247841.1 other upstream 659718 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 659850 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 712603 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 712603 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 718239 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 21060 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 21060 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 2919014 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3552402 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3625687 7299279 ~ 7304358 (+) False tcea2

Expression Profile