RNA id: XM_043224368.1


Basic Information

Item Value
RNA id XM_043224368.1
length 1957
RNA type mRNA
GC content 0.45
exon number 9
gene id slc25a55b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3497006 ~ 3500981 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCCAGCTGCCTGAGGCTTCTGGGAGTGGTTACCGTATATAACCCTCTCTGCTGCTCTGCACAGCGACTGCGCCTCTGTCTACCTCAGTCCTCAGACCAAACCACAAAACCTCTCACCATGGCTCAACAACCAATCAGCCTTCCTGCCAAGCTTATCAATGGTGGAGTTGCTGGACTGGTGGGTGTCACCTGTGTGTTCCCTATAGATCTTGCCAAGACAAGACTCCAGAACCAAAGAGGAAGCCAACAGGTTTACAAAAACATgaTGGACTGTCTGATTAAGACTGTTCGGTCTGAAGGATACTTTGGAATGTACAGAGGTGCTGCAGTCAACCTGACACTAGTGACTCCTGAGAAGGCCATCAAACTGGCAGCCAACGATTTCTTCCGTCAGCGGCTCAGTCGGGGAGAACTCAAGCTGAGCGTGTTTCAGGAAATGTTGGCTGGCTGCGGAGCAGGGATGTGTCAGGTCATTGTCACAACCCCCATGGAAATGCTTAAGATCCAGCTTCAAGATGCGGGGCGACTTGTGGCCCAGCAGAGGAAGTTACCTGTACTCCACACTGTGAAACTTGGGACAGCCAGTCCGGTCCTGAACTGTTCGTACAATGTGGGTCCTGTGTCTTCGATCAGGAAAGTGTCAGCCATTCAGATCACACAGGAACTGCTTCGCACAAAGGGCATCCAAGGACTTTACAAAGGACTAGGAGCAACCCTTATGAGGGACATCCCTTTCTCTGTGGTTTACTTCCCACTGTTTGCCCACATCAACAAGCTGGGCAAGACATCTGAGAATGATGATGTGCCTTTTTACTGGTCTTTTATTTCGGGCTGTGTGGCTGGATGTATAGCGGCTGTGGCAGTCAGTCCTTGTGACGTCGTGAAAACCCGGCTGCAGTCACTCAATAAAAGTGCAAACGAAGACACCTACAATGGCGTTGTGGATTGCATCAGAAAGATAATGCGCAAAGAAGGCCCGGCTGCTTTTCTGAAGGGTGCCGGCTGCAGGGCGCTGGTCATTGCTCCGCTCTTCGGAATCGCTCAAGTGGTTTACTTCATCGGCGTTGGGGAGTTTCTCTTGGGACAAACCCCATTCAACCTTTACTCTGTCTAAGCTGTGAAAACAACcaaattaaactttaaagaCCAGCGCAGCTATGATGCGACTAATTATCTGAGAACAAACCAAACAATTTGTATGAGAAGGCAAAATCGTTCAAATCTGCGCCGTACAAAAACATATATCTAGCATTACAGGTTAacgttatttttctttttaagtttaaatgtttctataaCGACCAAGTTATGGGACATCATACACTcagaaaaggtacaaaagctgtcacggGATAGTACTTTTTCAAATGTACCAATAAGTATTAATTTTGAAAGTACTACCATTCACTTTTCTCCGTGAGGGCACAATTTTGCCATCTTACACAAACTATTATGTGTCGTATAATTGTTAGAGTTGAAACAAATGGTTGCTGGAGAAGACTGTCAAAGGCTTGGAGTTTAACTTCCTGTCTTTACATGCTAACGGTAGCATATTCGACTGGCTTATTCAGGAAGCTATATCATTGcacatgtttctttttcttttgaaaatgtatggtCAGAGAGGTCAGATTTATCCTCAGTGAGGATTGATTTGAAAGCGTACGGCCATGACTCGTGCATTCAAGGGCCAGAAAATTGtgtcatatcttttttttttttacatgtcatCCATTAACAGTTCTGTCCTACCTTTCTTGTGACGTTTTGCACATGCACAGTATAAAGGAGGCACTGCTGATTAATGTGGACATTAGCATGGAGACATACCTATGAGGACATTGttatacaatatacataactctaaagagacacacacacagagacaggatGTTTGATTCCTGCTGAAGTGAGGCTTTGCTTTTACAGAATTAAACAACATTCTGTTCAACCTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228910 lncRNA upstream 96248 3400009 ~ 3400758 (+) True G154584
TU228908 lncRNA upstream 101599 3394923 ~ 3395407 (+) True G154582
XR_006247851.1 lncRNA upstream 181746 3314508 ~ 3315260 (+) True LOC122328887
TU228883 lncRNA upstream 254284 3242215 ~ 3242722 (+) True G154561
TU228833 lncRNA upstream 290318 3206482 ~ 3206688 (+) True G154517
TU229008 lncRNA downstream 99461 3600442 ~ 3600856 (+) True G154647
XR_006247898.1 lncRNA downstream 107382 3608363 ~ 3614844 (+) True LOC122329308
TU229029 lncRNA downstream 133783 3634764 ~ 3636277 (+) True G154661
TU229035 lncRNA downstream 138882 3639863 ~ 3640681 (+) True G154667
TU229041 lncRNA downstream 156118 3657099 ~ 3657405 (+) True G154673
XM_043224369.1 mRNA upstream 110 3494137 ~ 3496896 (+) True LOC122328605
XM_043224366.1 mRNA upstream 5384 3483012 ~ 3491622 (+) True zgc:101663
XM_043224367.1 mRNA upstream 5384 3483012 ~ 3491622 (+) False zgc:101663
XM_043224364.1 mRNA upstream 14145 3474016 ~ 3482861 (+) True ap4b1
XM_043224365.1 mRNA upstream 14145 3474025 ~ 3482861 (+) False ap4b1
XM_043225539.1 mRNA downstream 104275 3605256 ~ 3608341 (+) True LOC122329307
XM_043223992.1 mRNA downstream 127766 3628747 ~ 3631765 (+) True kcna2b
XM_043224160.1 mRNA downstream 149128 3650109 ~ 3655605 (+) True kcna10a
XM_043224434.1 mRNA downstream 168216 3669197 ~ 3673592 (+) False LOC122328631
XM_043224436.1 mRNA downstream 168347 3669328 ~ 3673592 (+) True LOC122328631
XR_006247841.1 other upstream 487396 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 487528 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 540281 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 540281 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 545917 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 193671 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 193671 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 3091625 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3725013 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3798298 7299279 ~ 7304358 (+) False tcea2

Expression Profile