RNA id: XM_043224160.1


Basic Information

Item Value
RNA id XM_043224160.1
length 2112
RNA type mRNA
GC content 0.47
exon number 3
gene id kcna10a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3650109 ~ 3655605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAAATGTAGAACAAGCAACAGGCAGAAACAACAGCCGTCGGGAGACCCCTCTCACACGAGAGGTTGAAGCACCTTGGATTCTTCCTCATTGCGTGGACCTCcacctaaaaaaacaaatgaccgATATCAGTTCAAAATTGTAAACCAGTGGGATTGTCCTGGTGTAGATTCAATTCATTGGTGGTCTGATATCCGGGGCCACATGACTGTCCAGGCTGGAAGAATTGAGGTGGCGCTAGTTGACTTTGAGGGGATGGAGAATACTAACGGTGTGGACAATTTCAATGACCCAGACTATCCAAATGAGATGACGGCTTTGACAGTAGAAATGCCAGAGTTTGGGCCTGACAGCACCTACTGCAATTCATCAAAAGTGTCACCATATAAAGAGAGGATGCCACAAAATTTAGACAAACCTCAATCACCGGTCCTGCCCCCTCACACCAGGAGAGGGCGTGCCAGCTGCGCTAGTCTGATTTCCAACTGGAAATTACTCCTGAACAGTGAAGGAACGCAAAGTGAGACGATCTTCAGTAAACTGGCCAAAGAATACGAGGACTTGTTTATTGACAAGCGACCTCTCGATGACGGCGATCAAAAGGTCATCATTAACATCGCTGGGCTTCGCTTTGAAACCCGCCTGAGGACCCTCGACCAGTTCCCAGACACCCTTCTGGGCGACCCCATGAAAAGAATGGGCTATTTCGACCCCATGAGAAACGAGTATTTCTTTGACCGCAATCGTCCAAGCTTTGACGGGATCTTGTACTACTACCAATCCGGCGGGAAGGTCCGGCGGCCTGCGAACGTACCTTTAGACGTCTTCGCGGATGAGATCATCTTCTACGAGTTGGGACAGGAAGCCATGGACCAGTTTCGCGAAGAGGAAGGATTTATCAAAGACGTGGAGGTCCCATTGCCCTCTAATGAGTTTTACAGGCAGTTCTGGCTGCTCTTTGAGTATCCCGAGAGCTCAAACGCAGCCAGAGGGGTCGCCCTGGTTTCCATCTTCGTCATCGTCATCTCCATCATCATATTCTGCATGGAGACTCTCCCAGAATTCAGAGAAGATATGGAAATTTTTCCAACCGCTGGAGTTTCCTTCAACCAGACGTATCCCTCAGGTGCTCCTCCGAGTGCGTCTCCCAAAACCATCAGCAGCACCTTCTCTGACCCTTTCTTCTTATTAGAGACGGCTTGCATCATCTGGTTCTTCTTTGAGCTCTCCGTACGTTTCCTGGTTTGCCCCAGCAAGCGGGAGTTTTTCAACAACATCATGAACATGATTGACATTGTCTCCATCATCCCCTATTTTGTCACGTTGATAACTGAAGTCGTGACCACCACCAATAAGTCCAACACAGGGCAGAATATGTCACTGGCCATCCTACGAATCATTAGACTGGTGCGAGTCTTCAGGATCTTCAAGCTTTCCAGACACTCCAAAGGGCTGCAGATCCTGGGCCAGACGCTCAAGGCCAGCATGAGGGAACTTGGCCTGCTTatcttctttctcttcatcGGCGTCATCCTCTTCTCAAGCGCCATCTATTTTGCTGAGGTGGATGATCCCAACACCCAGTTTGTTAGCATCCCTGATGGATTCTGGTGGGCTGTGGTGACCATGACCACTGTGGGATATGGAGACATGTGTCCTATTACTTTAGGCGGTAAGATTGTGGGCACTCTATGTGCCATTGCTGTGTTGACCATCGCCCTGCCTGTGCCTGTAATCGTCTCCAATTTTAACTACTTTTACCATAGAGAGACAGAGCAGGAGGAAAAGCAGCCCATAGCTGAATCAACTGATCAAGCTTTAAAGTCAGGGAATACAAAACATGGAAGTAGTTCCTCTCTGAACAAGGCAAATGGGAGCTGGCAGACTGACAAATCCAAGTGTTAAACCCATAtcgaattttattttcatgagcGTGAATCTCATTAAACATGtccaggtcatatttcaccacaaaatcAAGACACCCAGATAGCATAATGCAAGATGACTTCAtatggaaagcatctgctgtgtATGAACATCTAATGAACGTCTTTATGatgtcagttttatttacattcaaatagacGTATTGAAGATGGGCCAGTagta

Function

GO: NA

KEGG:

id description
K04881 KCNA10, KV1.8; potassium voltage-gated channel Shaker-related subfamily A member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229035 lncRNA upstream 9428 3639863 ~ 3640681 (+) True G154667
TU229029 lncRNA upstream 13832 3634764 ~ 3636277 (+) True G154661
XR_006247898.1 lncRNA upstream 35265 3608363 ~ 3614844 (+) True LOC122329308
TU229008 lncRNA upstream 49253 3600442 ~ 3600856 (+) True G154647
TU228910 lncRNA upstream 249351 3400009 ~ 3400758 (+) True G154584
TU229041 lncRNA downstream 1494 3657099 ~ 3657405 (+) True G154673
TU229049 lncRNA downstream 23114 3678719 ~ 3682780 (+) True LOC122328634
XR_006247817.1 lncRNA downstream 23158 3678763 ~ 3686108 (+) False LOC122328634
TU229062 lncRNA downstream 43504 3699109 ~ 3728810 (+) True G154690
TU229074 lncRNA downstream 141749 3797354 ~ 3797927 (+) False G154698
XM_043223992.1 mRNA upstream 18344 3628747 ~ 3631765 (+) True kcna2b
XM_043225539.1 mRNA upstream 41768 3605256 ~ 3608341 (+) True LOC122329307
XM_043224368.1 mRNA upstream 149128 3497006 ~ 3500981 (+) True slc25a55b
XM_043224369.1 mRNA upstream 153213 3494137 ~ 3496896 (+) True LOC122328605
XM_043224366.1 mRNA upstream 158487 3483012 ~ 3491622 (+) True zgc:101663
XM_043224434.1 mRNA downstream 13592 3669197 ~ 3673592 (+) False LOC122328631
XM_043224436.1 mRNA downstream 13723 3669328 ~ 3673592 (+) True LOC122328631
XM_043224433.1 mRNA downstream 13723 3669328 ~ 3673592 (+) False LOC122328631
XM_043224435.1 mRNA downstream 13723 3669328 ~ 3673592 (+) False LOC122328631
XM_043225373.1 mRNA downstream 35677 3691282 ~ 3693981 (+) True LOC122329176
XR_006247841.1 other upstream 640499 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 640631 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 693384 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 693384 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 699020 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 39047 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 39047 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 2937001 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3570389 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3643674 7299279 ~ 7304358 (+) False tcea2

Expression Profile