RNA id: TU229475


Basic Information

Item Value
RNA id TU229475
length 550
lncRNA type read_through
GC content 0.49
exon number 3
gene id G154972
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4771990 ~ 4816862 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatttttttttttttTAGGTTTAATCTTCgatttttattgacaaatctcCTCACAGACAATTTCATAGTTGTGAACCGCTTGTACGAGGTCGCTTTcctgtattttgaaaatgaaaccaTCAGAGCGTATAAACTGTAAACCGATTTGAAACCTTTACGATGGGTGTGAACGCACAGGTGCGAGTTAAGAGTCTGACGAGGAGTCTTTGACGTCCGTGCTCTCCGTGGCCTCGCTGACCTCGCTCATTTCTTTGCTCTCTCCTCCACTGTCCCCGTCTCCCTCCTTCTCTCCGTCCTGCACCGTCAGCTTCTCCACCAGGCCAGTAACAGATGTGTCCTGAGATGCTGGCGTCTCAGAGCCCCACAGACGAACACCTGGTTTCTGCAACTGCACATCAAGCACTCATCTgattccaaaaagaaaaaatgcttcAGGTTGCCATTTCCGTCGTCCCGTTCTCTCACAGTTTGTGTGGGTTCACCCATTTGTATGTACCCTCGTAGCGGAAGCCCACCTTCTGTACCAGCTCATCGGCCTCGGCGGGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229422 lncRNA upstream 218822 4551033 ~ 4553168 (+) True G154934
TU229284 lncRNA upstream 466558 4249319 ~ 4305432 (+) True G154837
TU229253 lncRNA upstream 610370 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA upstream 610370 4136398 ~ 4161620 (+) True G154815
TU229188 lncRNA upstream 722993 4048746 ~ 4048997 (+) True G154759
TU229478 lncRNA downstream 503 4817365 ~ 4835482 (+) True LOC122328459
TU229494 lncRNA downstream 19131 4835993 ~ 4838432 (+) True G154989
TU229506 lncRNA downstream 47463 4864325 ~ 4915121 (+) True G154997
TU229538 lncRNA downstream 159807 4976669 ~ 4977310 (+) True G155024
TU229552 lncRNA downstream 279666 5096528 ~ 5097144 (+) True G155032
XM_043224336.1 mRNA upstream 61653 4688893 ~ 4710337 (+) False uckl1b
XM_043224335.1 mRNA upstream 61653 4688893 ~ 4710337 (+) False uckl1b
XM_043224338.1 mRNA upstream 61653 4691332 ~ 4710337 (+) False uckl1b
XM_043224337.1 mRNA upstream 61653 4691333 ~ 4710337 (+) False uckl1b
XM_043224339.1 mRNA upstream 61653 4692120 ~ 4710337 (+) True uckl1b
XM_043224157.1 mRNA downstream 17459 4834321 ~ 4835484 (+) False LOC122328459
XM_043224428.1 mRNA downstream 68334 4885196 ~ 4909027 (+) False cacnb3a
XM_043224427.1 mRNA downstream 68335 4885197 ~ 4913873 (+) True cacnb3a
XM_043224430.1 mRNA downstream 103286 4920148 ~ 4927439 (+) True birc7
XM_043224431.1 mRNA downstream 103286 4920148 ~ 4927439 (+) False birc7
TU229052 other upstream 1075352 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 1075352 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1762380 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1762512 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1815265 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 1775744 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2409132 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 2482417 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 3514879 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 3671224 8488086 ~ 8488641 (+) True G155799

Expression Profile