RNA id: XM_043224428.1


Basic Information

Item Value
RNA id XM_043224428.1
length 2027
RNA type mRNA
GC content 0.51
exon number 15
gene id cacnb3a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4885196 ~ 4913873 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTACACTGTACACTGCTTGGAGCTTCAAAAAACCCCACATTACCTGAGCTGTTGTGACGTAAACCACTGCAATGTACTTATCTGAGAAATATCAGACATGCACAAAGTTCACAGAAATCGACGGCAGGCTGCTCCAGTGCAGCGGTTAAGTTCTTGCTATTTTTTGACTCGTCTAAATTTGTTTTGCTTAAATATTAATCTCCATGCATGAGCTGTACAAGAGAGACTAATGtgctcgagagagagagagagagagagagagagagagagagagagagagagagcagcacaCAGTAGCGCGAGACACATCATCACAAAAGGCGCATGCACAAGAAGCAGACCCGTTGCATTCGTACACCTGTATTTCAATCTCGATTTACAATAACCCGCGCGAAGGGAATATATCTTAGGATCTCCGCGTGTGCAGCTCAGACAGAAGCCTGACTGCTCAATCGTGATACCCTCTTCTTCCTCGGGAGGCATATGTATTCGGCATCGCCGTTTCTTCCAGTAAGCACCAATGCACGCGCGCACCCGCCTCCCTGCGCTCTCAAATAGATGGTGCAAGTAAAGATGTCCAAATCTTCCGCAGACCCTCTGTCTGGTGTAGAAAGCGCTTCCCAGTCGCACTATTTCCAGCTTCCACGAAAACTCCCGAAGCGCAAGGGTCGCTTTAAACGCTCCGATGGCAGCACCTCGTCTGACACCACCTCCAGCTTCATCAAGAGACAGGGTTCAGCCGATTCGTACACGAGCAGACCTTCGGATTCCGACCTGTCAGCGGAGGAGGACCGCGAGGCGTATCGGCGTGAAGCCGAACGCCAGGCCCAGCTGCAGCTCGAGAGAGCCAAGTCCAAACCTGTAGCGTTCGCGGTGAAGACAAATGTGAATTATTGCGGGGCTCTAGATGAGGACTGTCCTGTTCAGGGTGCTGCCATAAACTTTGAAGCCAAAGACTTTCTGCACATTAAAGAGAAGTACAATAATGACTGGTGGATTGGAAGGCTGGTGAAAGAGGGGGCAGACATCAGCTTCATTCCCAGCCCCCTCCGACTGGAGGCCATGAGACTCAAACAGGAGCAGAAACAACAGAgGAAAAGTGGTAACTCCTCCTCAAGCCTGGGCGACATGGTATCGGGAGGTTGGAGATCCACGCCGCCATCTGCAGCCAAACAGAAGCTAAAGCAGACTGAACACATTCCTCCATATGATGTGGTGCCGTCCATGAGGCCTGTGGTTCTGGTTGGGCCTTCTCTGAAGGGCTATGAGGTGACAGATATGATGCAGAAAGCCCTGTTTGACTTTCTCAAACATCGCTTTGACGGAAGGATTTCAATAACCCGGGTGACCGCTGACCTTTCTTTGGCCAAGAGATCGGTTCTCAACAAGAGACCCATCATGGAGAGGTCTAACACACGAACCAGTTTGGCGGAGGTACAAAGCGAGATCGAGAGAATATTTGAGCTGGCTAAAACTCTTCAGTTGGTGGTTCTAGACGCGGACACCATTAACCATCCAGCGCAACTAGCTAAAACCTCGTTAGCTCCTATTATTGTGTACGTCAAGGTCACCTCTCCAAAGGTCTTACAGCGGTTGATAAAGTCGAGGGGTAAATCACAGAGCAAACACCTTAATGTTCAGATGATGGCAGCAGATAAACTGGCTCAATGTCCTCCTGAGATGTTTGATGTCATTTTGGATGAGAACCAGTTGGAGGACGCCTGTGAGCACCTCGCTGAATATCTGGAGGTCTACTGGCGTGCCACTCATCTGCCTGGCACCGCCCCCCTCAACCCTCTATTGGAGCAAAATCTGATGACCCCGCCCTCAGCAATCTCCAGTCTACAGTTCTCTGAAACACAGGAATTAATTGAATGAACACTTACAAACCTGCGAACCAGCAGCTGTCGCCTGCCGGGGGTGGAGGGggagtggaggaggaggagcaagGGGAGCAGGACAGCCTCATGCCCTCCGACGAGGCCAGTGACTCTCGCTCCCTCCGTCGAGGCGGCTCTAGCTCCC

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229494 lncRNA upstream 46764 4835993 ~ 4838432 (+) True G154989
TU229478 lncRNA upstream 49714 4817365 ~ 4835482 (+) True LOC122328459
TU229475 lncRNA upstream 68334 4771990 ~ 4816862 (+) True G154972
TU229422 lncRNA upstream 332028 4551033 ~ 4553168 (+) True G154934
TU229284 lncRNA upstream 579764 4249319 ~ 4305432 (+) True G154837
TU229538 lncRNA downstream 67642 4976669 ~ 4977310 (+) True G155024
TU229552 lncRNA downstream 187501 5096528 ~ 5097144 (+) True G155032
TU229605 lncRNA downstream 307909 5216936 ~ 5235951 (+) True G155063
TU229635 lncRNA downstream 487531 5396558 ~ 5397923 (+) True G155078
TU229847 lncRNA downstream 839342 5748369 ~ 5778495 (+) True G155204
XM_043224157.1 mRNA upstream 49712 4834321 ~ 4835484 (+) False LOC122328459
XM_043225496.1 mRNA upstream 77199 4803448 ~ 4807997 (+) True lmod3
XM_043224714.1 mRNA upstream 84329 4730880 ~ 4800867 (+) True zbtb46
XM_043224713.1 mRNA upstream 91318 4730876 ~ 4793878 (+) False zbtb46
XM_043224337.1 mRNA upstream 174859 4691333 ~ 4710337 (+) False uckl1b
XM_043224430.1 mRNA downstream 11121 4920148 ~ 4927439 (+) True birc7
XM_043224431.1 mRNA downstream 11121 4920148 ~ 4927439 (+) False birc7
XM_043225262.1 mRNA downstream 73107 4982134 ~ 5028650 (+) True LOC122329057
XM_043225263.1 mRNA downstream 73107 4982134 ~ 5028650 (+) False LOC122329057
XM_043224037.1 mRNA downstream 120731 5029758 ~ 5075572 (+) True slc2a4rg
TU229052 other upstream 1188558 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 1188558 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1875586 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1875718 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1928471 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 1683579 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2316967 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 2390252 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 3422714 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 3579059 8488086 ~ 8488641 (+) True G155799

Expression Profile