RNA id: TU229494


Basic Information

Item Value
RNA id TU229494
length 2352
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G154989
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4835993 ~ 4838432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttatttttagagggGAAAAGTTTGTCTATATTCATCAAGAGTCTTTTCTCAACTTTCCTTTGCAAAGTTGAAAAGCTTGTCCCTTTTTCTAATCCTTCGACTGAAGTAAAAACGGAAATGAAACAAAACGAACGAaaaggtaaacaaaaaaataaagaggcgATCGAGAGGCGTCCGGCCCCCGATCTAGACAGAGGCCCCAGCGTGAGAGTCAGTAGTACTCAAATACACATCAGGTACTGTGTTTGCTTCCCTCGCGCTCAATCTCCGTTCTTGTGTGCTTTTATTGCACATGCTGAACGGAACAACAGGGCGCCCTGCCTTTGGTACGGACACGATCAACTGACACGCCATGACCAAACTACGACCGAAGCGGGTTTTCAATAAGCAAAGAACGCGCAGCAGGAAAAGACAGTGCTTTGGCCGTCATGCGAGAGATGAGCGAGTTAACGAAAGTTGCGTCTACCGGATGAATCGCATTGTGATAGAAAGAGGCACTGTTATCGTATGCTGAATTTGTTCAATTAAGGCAAATGCACTGCAATTCGCACCGCATGCACGCAGCGCACGGAAGGTCTCCCATGTTATTATTTAGCTGGCTAGCAACTGGTTACCTAACGAATTTGAAGTTTACGGTTTAGATATGCATTTTCCCAAGTGGCTTTTTCCTTAAAGAGATGTTCACTACAATGAAAAGAGCACTGTCGATCCGATCATGCGTCAGTTGATCAGTTGGTACCAAGCGTCTCAATTCAGGTCTCCTCCGCTGGAATGGAATCATAATCGAATAAATATAAGAACAACCAGAataggaataataaaaaaaaatggatacaGAGGTGATACAAAATACCCAAACAACTTCAGGGAAtcaaacgaacaaacaaaagtCGTAGAGAAGATACCACAATCAGACATGCTTTTGAGCTGTTTAGTTTGGCAAGAAAGCAGCTAGTTGTATCATAGAAACCTCACAGTGAAAAGAGTTATGCCCCTTCGAGATTACAAAGCACAGTATTCAGTCAtaatttatagatatatttctTTCGTTTTTAAAAAAGTCCTTCTAGAATAAATTGGATTTCGATAAACTGTCTTGTACCGTGGTATCCAATGCCGTGGCTTTTCCCCAGGTGCCTCcgaaaaactctttttttcctttttatttcattttgtaccAAAAATACTTCtttgaaaaaagaagaaatggttGACGGGACGCACGAAACAAAACCAAAAGTCTTCCTTGAGGCGCTGAAGGCCCAGACCCGGTCgtacttccaaaaaaaaaaaaaagaagggaaaaaaaaaactgtttcacaGCTTTTCCTAATTCGTCGTACTGAAGGAAAAGCAtgactttaaataaatcattcagtCCTTCATATGATCCGGTGAACAACGCTCTGTCAGTCAACCGGTGTGACTtactttaaatgataaaacatcattaaaaaaaaaaccaaacaggaTTAAAATCGAGGGGTGAGGACTTCAGAGCATTACATAATATTCAAAACTTCCGCAAATGTTTTGACGGCTTCTTTTCTATTAAATACTTTGGTCTTTGGTCAATAGTTCTCTTCTTAATTTATACAGATACTGTATtggtacacacacagatatacgaGCGTACGCGTTTATGTACGgtataaatgtgtatgtgtttttcacACTTGTTCCATAAAGGACTTTTTGCACAAAACATCgagatcaaaataaataaggaaTTCCGAACAAAACATGAGTACCTGTATTTATATtctcctgaaataaaaaataacagaggaaaaaaaaaatgtcacacaaaaataaaactagagAAAATGCCTTATGTACAGCGTTTTTCTTCGGCAAAtaaaggcctttattaaataaacagactTTGCATCTTTCAAGCAGCCTGAGGGAGGCTTAAAAACAATCGTCCTTCAAGGTGCACAGCTGTATCCACGAGCGCCACGACTCTCCAGTCTGGAGTCTGCTTGGGTTATTTTTTCGATAATCGTCCTTTTTTCGTTGTTTTTTCTTCAAGTGATGGCAATGGCTACTTGTTTGTCTTCTGCTTGCCTCGAGAAATCCTGCTCTCTGGTGAATTGTGGGAATCCAAAGGAACTCTAGTACGCTGCTAACTGTTGGGAGGTCCATCATTCAGGAAGTAAGTGGTCATCTCACCCTTGCCTTTCACCTTCACGACCCCTCGACACTCCAGCTGGTAACCTTTACTGGCCAACACCTGGTGCAGGTCTGTGGTCACCTGCTGCGGTCTGGGACCCCTGTACTGTCCATCCGACTGGCCACGTTTACGGTGTTTCCCCAGATATCATACTGCGGCTTCCTGGCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229478 lncRNA upstream 511 4817365 ~ 4835482 (+) True LOC122328459
TU229475 lncRNA upstream 19131 4771990 ~ 4816862 (+) True G154972
TU229422 lncRNA upstream 282825 4551033 ~ 4553168 (+) True G154934
TU229284 lncRNA upstream 530561 4249319 ~ 4305432 (+) True G154837
TU229253 lncRNA upstream 674373 4111382 ~ 4161620 (+) False G154815
TU229506 lncRNA downstream 25893 4864325 ~ 4915121 (+) True G154997
TU229538 lncRNA downstream 138237 4976669 ~ 4977310 (+) True G155024
TU229552 lncRNA downstream 258096 5096528 ~ 5097144 (+) True G155032
TU229605 lncRNA downstream 378504 5216936 ~ 5235951 (+) True G155063
TU229635 lncRNA downstream 558126 5396558 ~ 5397923 (+) True G155078
XM_043224157.1 mRNA upstream 509 4834321 ~ 4835484 (+) False LOC122328459
XM_043225496.1 mRNA upstream 27996 4803448 ~ 4807997 (+) True lmod3
XM_043224714.1 mRNA upstream 35126 4730880 ~ 4800867 (+) True zbtb46
XM_043224713.1 mRNA upstream 42115 4730876 ~ 4793878 (+) False zbtb46
XM_043224337.1 mRNA upstream 125656 4691333 ~ 4710337 (+) False uckl1b
XM_043224428.1 mRNA downstream 46764 4885196 ~ 4909027 (+) False cacnb3a
XM_043224427.1 mRNA downstream 46765 4885197 ~ 4913873 (+) True cacnb3a
XM_043224430.1 mRNA downstream 81716 4920148 ~ 4927439 (+) True birc7
XM_043224431.1 mRNA downstream 81716 4920148 ~ 4927439 (+) False birc7
XM_043225262.1 mRNA downstream 143702 4982134 ~ 5028650 (+) True LOC122329057
TU229052 other upstream 1139355 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 1139355 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1826383 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1826515 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1879268 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 1754174 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2387562 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 2460847 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 3493309 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 3649654 8488086 ~ 8488641 (+) True G155799

Expression Profile