RNA id: TU229506


Basic Information

Item Value
RNA id TU229506
length 512
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G154997
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4864325 ~ 4915121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtaaaaaaaaaaaaaaaaaaaaaaggaaagatgtTTGCTGCTCTAGCCGAACAACTTAGGATGTCAAGTATTGCCTTCTCTCTACTACAGCTTTCTTACAGATTTCTACACTTTGTCATTGGTTTATCTGGCAGAAAACCGATCCTCTGGATTACTGGTGGTCTCTCATGAACTTGGTTGCAAATAATCTGGTGGTAAAACACAGCACACTTACAAGATGTACAACAGGAAACAAAACAGCATGTGTAAATGGTCTGGCTCAGGCAAAGATGgtctcctctctcctcttcttGGTGAGGATGGTGCCGGGTTTGTGCTGGGCGTCCGGGTGATTGGCCAGCTCCGGAGGGCAGGTGGACACGGGGCTTTCTAAGATGGCCTGTTTCAGGTCGTAGAAAACAGAAGAGTCTTCTTTGGTCAGGAAAGTCATGGCCACACCACTCTTTCCAGCACGACCCGTTCGGCCAATACGATGGATATAATCTgtgaacagaaacaaaaattaaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229494 lncRNA upstream 25893 4835993 ~ 4838432 (+) True G154989
TU229478 lncRNA upstream 28843 4817365 ~ 4835482 (+) True LOC122328459
TU229475 lncRNA upstream 47463 4771990 ~ 4816862 (+) True G154972
TU229422 lncRNA upstream 311157 4551033 ~ 4553168 (+) True G154934
TU229284 lncRNA upstream 558893 4249319 ~ 4305432 (+) True G154837
TU229538 lncRNA downstream 61548 4976669 ~ 4977310 (+) True G155024
TU229552 lncRNA downstream 181407 5096528 ~ 5097144 (+) True G155032
TU229605 lncRNA downstream 301815 5216936 ~ 5235951 (+) True G155063
TU229635 lncRNA downstream 481437 5396558 ~ 5397923 (+) True G155078
TU229847 lncRNA downstream 833248 5748369 ~ 5778495 (+) True G155204
XM_043224157.1 mRNA upstream 28841 4834321 ~ 4835484 (+) False LOC122328459
XM_043225496.1 mRNA upstream 56328 4803448 ~ 4807997 (+) True lmod3
XM_043224714.1 mRNA upstream 63458 4730880 ~ 4800867 (+) True zbtb46
XM_043224713.1 mRNA upstream 70447 4730876 ~ 4793878 (+) False zbtb46
XM_043224339.1 mRNA upstream 153988 4692120 ~ 4710337 (+) True uckl1b
XM_043224430.1 mRNA downstream 5027 4920148 ~ 4927439 (+) True birc7
XM_043224431.1 mRNA downstream 5027 4920148 ~ 4927439 (+) False birc7
XM_043225262.1 mRNA downstream 67013 4982134 ~ 5028650 (+) True LOC122329057
XM_043225263.1 mRNA downstream 67013 4982134 ~ 5028650 (+) False LOC122329057
XM_043224037.1 mRNA downstream 114637 5029758 ~ 5075572 (+) True slc2a4rg
TU229052 other upstream 1167687 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 1167687 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1854715 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1854847 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1907600 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 1677485 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2310873 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 2384158 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 3416620 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 3572965 8488086 ~ 8488641 (+) True G155799

Expression Profile