RNA id: TU229847


Basic Information

Item Value
RNA id TU229847
length 602
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G155204
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5748369 ~ 5778495 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgagtgagtgagagtgtgagcgtgtgtgtgtgtgtgtgtgcgtgcgtgtgagcATGAacgtgtgtaggtgtgtgtttctgtatttaGTGCACTTGTAATCCCATGAAATAGGCTTGAATATGGAGTGTCGGTAGAGATTTTGGTGAATTTGATTGTGTGCTGTGGAATTTTGTACTAAGGGGGTCTGTAGAAAGTGGAGCCCCCTGCcagtttttaaaagtcattcttTTCATTACTTCAACTTTTGTGTGAAATGAGGATTTACGAAGTTAGAGTTCGACCCACCGCAGGTCTGACGGAGAAGGTCCTCTAAAGaagtttacaaataaaagtcaTTGCGTTTGATTAGAAATGAGTCCGAACAGGTACAAATAAATGATCCAAAAACATAGATTTTATTCAGACGCTCTAGAAACTGTTAAATCTattaatacttatcaaataacgAGAGTAATGGacaaaatgatcttttattcctttaaagtttTTACCTAGGTTGGCAAGAGTTCTGAATCTAAACtattattctctctctttttcccctgGTGTATTAACTGTGCATTAATACCcctcaaataattaataaaatgttgacAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229635 lncRNA upstream 350446 5396558 ~ 5397923 (+) True G155078
TU229605 lncRNA upstream 512418 5216936 ~ 5235951 (+) True G155063
TU229552 lncRNA upstream 651225 5096528 ~ 5097144 (+) True G155032
TU229538 lncRNA upstream 771059 4976669 ~ 4977310 (+) True G155024
TU229506 lncRNA upstream 833248 4864325 ~ 4915121 (+) True G154997
XR_006247894.1 lncRNA downstream 14787 5793282 ~ 5796312 (+) True LOC122329298
TU229931 lncRNA downstream 141271 5919766 ~ 5920057 (+) True G155262
TU229932 lncRNA downstream 145907 5924402 ~ 5924611 (+) True G155263
TU229985 lncRNA downstream 356485 6134980 ~ 6137638 (+) True G155295
TU230030 lncRNA downstream 597575 6376070 ~ 6380365 (+) True G155330
XM_043225510.1 mRNA upstream 95509 5648485 ~ 5652860 (+) True LOC122329285
XM_043225390.1 mRNA upstream 244030 5492958 ~ 5504339 (+) True LOC122329193
XM_043224035.1 mRNA upstream 655199 5083544 ~ 5093170 (+) True exosc10
XM_043224036.1 mRNA upstream 655199 5083548 ~ 5093170 (+) False exosc10
XM_043224037.1 mRNA upstream 672797 5029758 ~ 5075572 (+) True slc2a4rg
XM_043225514.1 mRNA downstream 510 5779005 ~ 5793166 (+) False LOC122329289
XM_043225519.1 mRNA downstream 510 5779005 ~ 5793166 (+) False LOC122329289
XM_043225517.1 mRNA downstream 510 5779005 ~ 5791848 (+) False LOC122329289
XM_043225515.1 mRNA downstream 2773 5781268 ~ 5793166 (+) False LOC122329289
XM_043225516.1 mRNA downstream 3454 5781949 ~ 5793166 (+) True LOC122329289
TU229052 other upstream 2051731 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 2051731 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 2738759 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 2738891 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 2791644 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 814111 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 1447499 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 1520784 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 2553246 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 2709591 8488086 ~ 8488641 (+) True G155799

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU132490 True 2326 lncRNA 0.38 1 CI01000021 1113011 ~ 1115336 (-)
eurasian perch (Perca fluviatilis) TU132490 False 627 lncRNA 0.47 2 NC_053120.1 25558113 ~ 25572875 (+)
tiger barb (Puntius tetrazona) TU132490 False 522 TUCP 0.58 5 NC_056711.1 28996 ~ 32186 (-)