RNA id: TU229635


Basic Information

Item Value
RNA id TU229635
length 1263
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G155078
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5396558 ~ 5397923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcgcaaccttttgaggcaatcactgcaatcaaacgcttcctgtaactgtcaatgagacttctgcacctctcagcaggtattttggcccactcctcatgagcaaactgctccagttgtgtccggtttgaagggtgccttttccagactgcatgtttcagctccttccaaagatgctcaataggattgaggtcagggctcatagaaggccactttacaatagtccaattttttcctcttagccattcttgggtgtttttagcggtgtgttttgggtcattgtcctgttgcaagacccatgacctgcgactgagaccaagctttctgacactggctagtacatttctctctagaattccttgatagtcttgagatttcattgtaccctgcacagattcaagacaccctgtgccagacgcagcaaagcagccccagaacataacagagcctcctccatgtttcacagacattctcccagaagctttgtggcttgtcaacatgtagtttggcatattccagtcttgcttttttatgattcgttttcaacaatggtgtcctccttggtcgtctcccatgtagtccactttggctcaaacaacgacggatggtgcgatctgacactgatgttccttgagcatgaagttcaccttgaatctcttcagaagtctttctaggctcttttgttaccattcggattatccgtctcttagatttgtcatcaattttcctcctgcggccacgtccagggaggttggctacagtcccatggatcttaaacttctgaataatatgtgcaactgtagtcacaggaacatctagttgcttggagatggtcttatagcctttacctttaacatgcttgtctataattttctttctgatctcttgagacaactctttcctttgcttcctctggtccatgtcgagtgtggtacacaccatatcaccaaacaacacagtgattacctggagccatatatataggcccaatggctgattacaaggttgtagacacctgtgatgctaattagtggacacaccttgaattaacatgtccctttggtcacattattttcagtgttttctaggggtaccatcatttttgtccatgcctgtttcgtgagtttatttttttaaataattctgttgaagcatggttgaaaaacaatgtctgactttcattggttaacatttatagaatttttatttattattacttttgtcagataacagttatttctgtgaccattgtgactttttctttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229605 lncRNA upstream 160607 5216936 ~ 5235951 (+) True G155063
TU229552 lncRNA upstream 299414 5096528 ~ 5097144 (+) True G155032
TU229538 lncRNA upstream 419248 4976669 ~ 4977310 (+) True G155024
TU229506 lncRNA upstream 481437 4864325 ~ 4915121 (+) True G154997
TU229494 lncRNA upstream 558126 4835993 ~ 4838432 (+) True G154989
TU229847 lncRNA downstream 350446 5748369 ~ 5778495 (+) True G155204
XR_006247894.1 lncRNA downstream 395359 5793282 ~ 5796312 (+) True LOC122329298
TU229931 lncRNA downstream 521843 5919766 ~ 5920057 (+) True G155262
TU229932 lncRNA downstream 526479 5924402 ~ 5924611 (+) True G155263
TU229985 lncRNA downstream 737057 6134980 ~ 6137638 (+) True G155295
XM_043224035.1 mRNA upstream 303388 5083544 ~ 5093170 (+) True exosc10
XM_043224036.1 mRNA upstream 303388 5083548 ~ 5093170 (+) False exosc10
XM_043224037.1 mRNA upstream 320986 5029758 ~ 5075572 (+) True slc2a4rg
XM_043224038.1 mRNA upstream 320986 5029758 ~ 5075572 (+) False slc2a4rg
XM_043225263.1 mRNA upstream 367908 4982134 ~ 5028650 (+) False LOC122329057
XM_043225390.1 mRNA downstream 95035 5492958 ~ 5504339 (+) True LOC122329193
XM_043225510.1 mRNA downstream 250562 5648485 ~ 5652860 (+) True LOC122329285
XM_043225514.1 mRNA downstream 381082 5779005 ~ 5793166 (+) False LOC122329289
XM_043225519.1 mRNA downstream 381082 5779005 ~ 5793166 (+) False LOC122329289
XM_043225517.1 mRNA downstream 381082 5779005 ~ 5791848 (+) False LOC122329289
TU229052 other upstream 1699920 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 1699920 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 2386948 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 2387080 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 2439833 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 1194683 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 1828071 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 1901356 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 2933818 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 3090163 8488086 ~ 8488641 (+) True G155799

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU336538 True 260 lncRNA 0.39 1 NW_019171282.1 21392 ~ 21651 (-)