RNA id: TCONS_00005767


Basic Information

Item Value
RNA id TCONS_00005767
length 437
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_002823
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28197916 ~ 28291989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGATGTCATAATTGTTGTTCTTTGCACCGTCACTGGCAGGAGGAGCATTAACaatctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtacccTCAGGGCTTTCTACAGTGAACTCAAACTGAACATATACACATAAGCACATGTTCCTGTCTATTCAAAGTGTGCAGGGAGGGGGAACTGTAATAGGGGAGGTCCCTTGTGTTCTTCACATCCCATGCTGCCATGTTATCAGGGACGGGCCCCAGTGATGAAGGCTCTGAGAAGCTTGCAGAGATGTTCCACTTAACAATGATCTCATATCTGACTCACGGATTGCTTCTGGACATTTCTCTGAAACACTTTCTGGAGATTATTTTCACTGCTACAACAAAAACTGGGAAAGACACACACTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005765 lncRNA downstream 5309 28201860 ~ 28233742 (-) False XLOC_002823
TCONS_00006064 lncRNA downstream 36230 28197916 ~ 28202821 (-) False XLOC_002823
TCONS_00006063 lncRNA downstream 1076906 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA downstream 1076906 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00006061 lncRNA downstream 1236437 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00005768 lncRNA upstream 5463 28261569 ~ 28276887 (-) False XLOC_002823
TCONS_00005769 lncRNA upstream 20577 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00005241 lncRNA upstream 61311 28317417 ~ 28318086 (-) False XLOC_002826
TCONS_00005242 lncRNA upstream 64138 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00006072 lncRNA upstream 125979 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005236 mRNA downstream 45409 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 121016 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 121016 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005235 mRNA downstream 121311 28030042 ~ 28117740 (-) True XLOC_002821
TCONS_00005232 mRNA downstream 211561 28026827 ~ 28027490 (-) True XLOC_002820
TCONS_00005239 mRNA upstream 54925 28311031 ~ 28368913 (-) False XLOC_002826
TCONS_00005240 mRNA upstream 56107 28312213 ~ 28368695 (-) False XLOC_002826
TCONS_00005243 mRNA upstream 114710 28370816 ~ 28380928 (-) False XLOC_002827
TCONS_00005247 mRNA upstream 114712 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005246 mRNA upstream 114712 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005237 other downstream 40010 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005228 other downstream 824689 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1068979 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1229927 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005203 other downstream 1494920 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005238 other upstream 36737 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005248 other upstream 115103 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 186634 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 191800 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 198394 28454500 ~ 28455171 (-) True XLOC_002833

Expression Profile

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