RNA id: XM_036966209.1


Basic Information

Item Value
RNA id XM_036966209.1
length 1729
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110508994
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32191802 ~ 32201824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCTTGAAAAAAGCTTGTCCTCCTCTGACTAAAAGAGAAAGCGGAATTGAGAGTTCCTGTTCCCGATGCAACGAAAAGACCCTGGTGGCTTGACAGAGCCGAGTACAGTTCCATTAAAAAGCTGTCAGGCATGCGGACTATCTTCTCCGATCTGTCCAGTATCCACATCTCCTTCTCCAAATCAGAGCAATTCGTTTCTAAAAGCCAGGGATAGGCTACAGTATAAGGTAAAGAGGTAAGATGGCCACCCCCTTTGTCCCAGTGCCTGTCCCCATGGAACGAACCCCGACCTGGCCAAAGAGGACCCCCCCCCTGGGTATTATCTCTAGCTCTGGCTTTTCACCTCCTGGAAAGTCCCCCTGGGTGAAGGCCACTGGGTCCTGGGGGGCCACGGTAGCCTGTCCGAGCCTCCCCCAGGCGTGTTCCAGCCCCGAGGGGTACAGGATATCcagaggaggggagcaggggtCGGTCCAGGAGGATGGTACTCCAGGGGACAGTTGGGAGAGGCCCCTCACCCCTTCCCTGCTGGGCTATGAGGTCATGGAGGAGAGGGCAAAGTTCACGGTGTATAAAATCTTGGTGAGAAGGAATGAGGAAGAGAACTGGGTGATCTTCAGAAGGTACACAGACTTCGCCAGACTCAACGATAAGCTTAAGGAGTTATTTCCCAGGTTCAGACTAGCCCTTCCACCCAAGCGCTGGTTCAAGGATAACTACGACATGGAGTTTCTGGAGGAGAGACAGTTAGGCCTACAAGCCTTCCTACAGAACCTCATAGCACACAGAGATCTCACCAACAGTGAAGCGGTCAGACAGTTCCTTTGTCTGGATGATCCGCCAGGCCCCTTTGACAGCCTGGAGGAGAGCAGGGCTTTCTGTGAGAcgctggaggagaccaaccaccGTCTACAGAGGGACCTGTCGGAGAAACAGCGAGAGATTGACTCTTTGAAAACAGCCCTGGATGAGAGACAGACCCACATTGGGCTCCTGGAGAAGAGAGTGAAtggtaAGTCCCCCAGCCCAGAGGGCCTTACTCCAGAGAGCAGCAGACTATCAGCCCTAGGCAGTGAGAACAGCTCTGACACAGACACTgccgcagacagacacagagacacagacggagaggcggacatagacacagacagggGATCATCCACTGCATTGGAGGCTGACCAGGAGACATGTCCTGAAAGAAGAAGCTCAGAAATCCAAGGGCCACTCAAGGGTCATGGGGCGTACTGGTCATCTGCGGCCATTGATTGTTCACCAGACGCTTTTATAAATTCAACAACTCCATAGAATGATGTGGAATTCTGCATTTGATTCTGACCTGGGACCTGGAAAAGTATATTATTCCAAGATGGACTGATGATGAGCTACGAGTGTATAGACTTCATGTACAGATTCTTGCTTGTAGTGACTGCGTTAATGGGTGATTGAAGTTTTcatataaggtgtgtgtgtgtgggtgggggggggggggggggggttgtgtgtctAAGGATTCTAGAAATATACTGTAGATGAGTATTGATTTCCAACACTTGTTCTGCTCTCATCTAATGCCTTGGTTGTAAAATAATCAAGTGAAGATATACTGCAATATGTGTCTAACTGCCTTACATCAATCTCTTTTCTACAAAGCtaagtactgtagtactgtactcAGGTTCTCCTCCCTGCGAAAAGCAATACTAATAAACTTGATTGATCTTAAAACG

Function

GO: NA

KEGG:

id description
K17928 SNX16; sorting nexin-16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434161 lncRNA downstream 4319 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 4319 32157032 ~ 32187483 (-) True asip2b
TU2434140 lncRNA downstream 162577 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 163164 32023058 ~ 32028638 (-) False LOC110508982
TU2434136 lncRNA downstream 163244 32023058 ~ 32028558 (-) False LOC110508982
TU2434272 lncRNA upstream 39058 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 65883 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 95369 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 103475 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 107586 32309410 ~ 32309627 (-) True G2129044
XM_021589925.2 mRNA downstream 4283 32157032 ~ 32187519 (-) False asip2b
XM_036966717.1 mRNA downstream 26756 32157032 ~ 32165046 (-) False asip2b
XR_005040246.1 mRNA downstream 26765 32157032 ~ 32165037 (-) False asip2b
XM_021589923.2 mRNA downstream 62431 32119973 ~ 32129371 (-) True LOC110508991
XM_021589921.2 mRNA downstream 87091 32100303 ~ 32104711 (-) True tsen15
XR_002471384.2 mRNA upstream 26601 32228425 ~ 32230258 (-) False LOC110508997
XR_002471383.2 mRNA upstream 39968 32241792 ~ 32243585 (-) False LOC110508996
XM_036966476.1 mRNA upstream 42292 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA upstream 42292 32244116 ~ 32263430 (-) True ccdc39
NM_001160591.1 mRNA upstream 61819 32263643 ~ 32267018 (-) True dcnl1
TU2434163 other downstream 26780 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 26780 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 26780 32157032 ~ 32165022 (-) False asip2b
TU2434105 other downstream 163244 32023058 ~ 32028558 (-) False LOC110508982
TU2434271 other upstream 26582 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1196723 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1838382 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1839614 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1839745 34041569 ~ 34042565 (-) False LOC110509052

Expression Profile