RNA id: TU2405533


Basic Information

Item Value
RNA id TU2405533
length 984
lncRNA type read_through
GC content 0.44
exon number 2
gene id G2103127
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9968699 ~ 9974115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTAGTATTGTCTTTATTGACAACATGGCTCAGACAAAAACAGAAAATGAACACCCGAAAAACATACATCCTGCAGTATCGGAGTTGTAACCAGGTAAGTGTTGAGTGACAATTTAGAGCCATCTCATCCGAGTTGTAGCTTGGAATGTGTGCTCAGCGGACCTAGACCAAATAAATACTCGTTATTTTTCAGTTACTTGAGGTACGCTTGATTTAGCTTGCTCAGCATGCCAGAGTTCACgtttttgggactattccattggcaCCTAAAGTATTAACCCTAACAAAAACAAGTACATGTTTGACCCAGGTGTGGTTGTCAGTAAGGCTGAGGTCCTGTTGGCAAGTCTGTGTGACTGCGATGCCAGGTGACTGAAACCATATATATAAAAAGAAAGATTCTCTTCAGAGGGAGGAACGGATGACGACCCACGTAGACAGAAAAGGCTGACAGTCTATGAGACCCACTCTCCTAAAGAGATCTTGACTGCCTGCTATACAAGTAACTTCATCTCAGTAAACATTGTATTTGAATGATGGTCCATGCCTGAAACTGACTCCTCTTAACAATACTGTAAAATAGACTCAAAATCAGTCCCATCTAAACCATTGATTGGATTCTCATTCGCAGATCTAAAGCGTCACCATGATCCTGGTTCGTATGTTTCATGGTATGAGCAGGCTCATTATTACAGGCCAATTGGTGAAATGCTGGACATTGTGAGAAACTACCCGCACTTCATTAGCAACAAAGTGCCTGTTTaattatgtatgtatgtgtgtatgtgtatatatgagaGTGAGTGCGTGTATATGAGAGTGTGTGCGAGGTCTTCACAGGCCGATGGTGTAGGACCTTCCTGCTGGGTTGTGGATAGCGGAGCACGAGGGCTCTGTCACGGCCCACTCGTACCACACCTTCTTCCCATTGTTACACCTCCAGAACCTCACCACGACGTCATCATCCCGCGTCACAGGGATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405516 lncRNA downstream 21758 9947067 ~ 9947303 (-) True G2103115
TU2405512 lncRNA downstream 23769 9944948 ~ 9945292 (-) True G2103111
TU2405499 lncRNA downstream 40596 9928153 ~ 9928465 (-) True G2103098
TU2405496 lncRNA downstream 42377 9926467 ~ 9926684 (-) True G2103095
TU2405491 lncRNA downstream 46697 9922014 ~ 9922364 (-) True G2103090
TU2405557 lncRNA upstream 43612 10017727 ~ 10017943 (-) True G2103148
TU2405562 lncRNA upstream 48183 10022298 ~ 10022640 (-) True G2103153
TU2405580 lncRNA upstream 84234 10058349 ~ 10059960 (-) True LOC118944863
TU2405639 lncRNA upstream 201814 10175929 ~ 10176164 (-) True G2103229
TU2405641 lncRNA upstream 209793 10183908 ~ 10184116 (-) True G2103231
LOC110508158 mRNA downstream 28556 9938973 ~ 9940505 (-) True LOC110508158
LOC110508157 mRNA downstream 31748 9897773 ~ 9937313 (-) True LOC110508157
XM_036966297.1 mRNA downstream 85090 9743940 ~ 9883971 (-) False LOC110508473
XM_036966293.1 mRNA downstream 85094 9739138 ~ 9883967 (-) False LOC110508473
XM_036966294.1 mRNA downstream 86162 9739138 ~ 9882899 (-) False LOC110508473
XM_021589014.2 mRNA upstream 30111 10004226 ~ 10007929 (-) False LOC110508476
XM_021589018.2 mRNA upstream 56678 10030793 ~ 10041030 (-) False LOC110508478
XM_021589019.2 mRNA upstream 56678 10030793 ~ 10041031 (-) True LOC110508478
XR_005040255.1 mRNA upstream 84241 10058356 ~ 10060043 (-) False LOC118944863
XM_021589020.2 mRNA upstream 94751 10068866 ~ 10076428 (-) True dhrs1
TU2405361 other downstream 157203 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 192153 9776619 ~ 9776908 (-) True G2103015
TU2405308 other downstream 400010 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 713895 9231694 ~ 9255166 (-) False G2102731
TU2405120 other downstream 788911 9178334 ~ 9180150 (-) True LOC110508459
TU2405551 other upstream 30111 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 139313 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 231948 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 733897 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 912083 10886198 ~ 10894080 (-) True LOC110508522