RNA id: TU2433837



Basic Information


Item Value
RNA id TU2433837
length 754
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2128668
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32157035 ~ 32192779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTAACAAAGTTAGTGGAAGTTATTTGATGTTTTTTATGGGTTAGCATTGGCTCGACATGACCTACAATCTACAGTAGCAGAGGTGCACAGTTATACAAAAGCAGAATTAATACAGTTGTGCAGGAAACATATACTGTTACATATCCACAACACATCCATACATCGTTTATATACATACATAGAAAATATTGTGGGCCTTGCGATACGTGATCTGTCATTGAACCTATATTGTGGGCCTTGCGATACGTGATGTGTCATTGAGCCTATATTGTGGGCCTTGCGATACGTGATGTGTCATTGAACCTATATTGTGGACCTTGTGATATGTGATGTGTCATTCATCAGGTCCAAAACATTTAAGCATATATATCTGTGTAGTATGTCCATGTTTTTGTATCCGTATGTGTTTACCTGTGCAAGTGCATCAGTGTGATGTCTAGCAGTCTCTGTGagatgtgtatgtgagtgtgtgtgtttgcctgtacaGGGTCTCTGGTTCCTCTAGGGGCAGTGCTGGCCCAGTTTCCAACAGTGGCAgtcgtgtgtgtatatgtggtgaAGAgttatgtatggtgtgtgtgtgtgtgtgtgtttgtctaggtCTTCTTGGGGCAGTGTGGGCCCAGTCTCCAGCAGTGGCAGATGGTGTTGAAGAGGCGACAGCGGCAGGAAGCACAGGGGTCACAGCAGGGGGTGTGAGGGGCACAGCTATCCATCAGACGGCCACACCGCCGGGCAGGGGCTACAGGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2433873 lncRNA upstream 65513 32090905 ~ 32091522 (+) True G2128693
TU2433856 lncRNA upstream 81254 32074995 ~ 32075781 (+) False G2128680
TU2433857 lncRNA upstream 81254 32074995 ~ 32075781 (+) False G2128680
TU2433858 lncRNA upstream 81254 32074995 ~ 32075781 (+) False G2128680
TU2433859 lncRNA upstream 81254 32074995 ~ 32075781 (+) True G2128680
TU2433933 lncRNA downstream 29031 32186853 ~ 32237899 (+) True G2128744
TU2433839 lncRNA downstream 34229 32192051 ~ 32192779 (+) True G2128668
TU2433952 lncRNA downstream 109234 32267056 ~ 32267582 (+) True G2128756
TU2433991 lncRNA downstream 109840 32267662 ~ 32267975 (+) True G2128792
TU2433945 lncRNA downstream 111496 32269318 ~ 32274380 (+) True G2128753
XM_036966025.1 mRNA upstream 37960 32109770 ~ 32119075 (+) True si:ch211-13f8.2
XM_021589920.2 mRNA upstream 58239 32087652 ~ 32098796 (+) True LOC110508986
XR_002471382.2 mRNA upstream 102082 32053231 ~ 32054953 (+) False LOC110508984
XM_021589915.2 mRNA upstream 124175 32029589 ~ 32032860 (+) True LOC110508981
XM_021589914.2 mRNA upstream 136154 32015146 ~ 32020881 (+) True LOC110508980
XM_021589929.2 mRNA downstream 43993 32201815 ~ 32223340 (+) True LOC110508995
XR_002471387.2 mRNA downstream 111393 32269215 ~ 32274380 (+) False LOC110508999
XR_002471385.2 mRNA downstream 111394 32269216 ~ 32274380 (+) False LOC110508999
XR_002471386.2 mRNA downstream 111394 32269216 ~ 32274380 (+) True LOC110508999
XR_005040316.1 mRNA downstream 112338 32270160 ~ 32270230 (+) True LOC118944912
TU2433832 other upstream 101380 32053769 ~ 32055655 (+) True LOC110508984
TU2433828 other upstream 101944 32053769 ~ 32055091 (+) False LOC110508984
TU2433827 other upstream 102092 32053676 ~ 32054943 (+) False LOC110508984
TU2433826 other upstream 102092 32053769 ~ 32054943 (+) False LOC110508984
TU2433758 other upstream 208733 31945164 ~ 31948302 (+) False G2128614
TU2433942 other downstream 111496 32269318 ~ 32274380 (+) False G2128753
TU2433943 other downstream 111496 32269318 ~ 32274380 (+) False G2128753
TU2433944 other downstream 111496 32269318 ~ 32274380 (+) False G2128753
TU2434599 other downstream 473467 32631289 ~ 32700844 (+) False pfn2l
TU2434597 other downstream 515981 32673803 ~ 32700844 (+) True pfn2l

Expression Profile