Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060038 |
| length | 4864 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 29 |
| gene id | XLOC_030879 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 12100126 ~ 12525441 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007210 | serotonin receptor signaling pathway | biological_process |
| GO:0006936 | muscle contraction | biological_process |
| GO:0031284 | positive regulation of guanylate cyclase activity | biological_process |
| GO:0045776 | negative regulation of blood pressure | biological_process |
| GO:0007263 | nitric oxide mediated signal transduction | biological_process |
| GO:0098924 | retrograde trans-synaptic signaling by nitric oxide | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0006527 | arginine catabolic process | biological_process |
| GO:0009725 | response to hormone | biological_process |
| GO:0048668 | collateral sprouting | biological_process |
| GO:0032496 | response to lipopolysaccharide | biological_process |
| GO:0006809 | nitric oxide biosynthetic process | biological_process |
| GO:0021517 | ventral spinal cord development | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0012506 | vesicle membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | molecular_function |
| GO:0005516 | calmodulin binding | molecular_function |
| GO:0004517 | nitric-oxide synthase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003958 | NADPH-hemoprotein reductase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| GO:0050661 | NADP binding | molecular_function |
| GO:0010181 | FMN binding | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ko00220 | Arginine biosynthesis |
| ko00330 | Arginine and proline metabolism |
| ko04371 | Apelin signaling pathway |
| ko04020 | Calcium signaling pathway |
| ko04145 | Phagosome |
| ko04926 | Relaxin signaling pathway |
| ko04970 | Salivary secretion |
| ko04730 | Long-term depression |
| ko04713 | Circadian entrainment |
| ko05010 | Alzheimer disease |
| ko05014 | Amyotrophic lateral sclerosis |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko03019 | Messenger RNA biogenesis |
| id | description |
|---|---|
| ZDB-GENE-001101-1 | Predicted to enable FMN binding activity; flavin adenine dinucleotide binding activity; and nitric-oxide synthase activity. Acts upstream of or within several processes, including animal organ development; collateral sprouting; and nitric oxide mediated signal transduction. Predicted to be located in dendritic spine and sarcolemma. Predicted to be active in several cellular components, including cytosol; postsynaptic density; and vesicle membrane. Is expressed in brain; enteric nervous system; nitrergic neurons; spinal cord; and trunk. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; asthma; cystic fibrosis; and hypertrophic pyloric stenosis. Orthologous to human NOS1 (nitric oxide synthase 1). |
| ensembl_id | ENSDART00000099810 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00060032 | lncRNA | downstream | 81981 | 12010828 ~ 12018688 (-) | False | XLOC_030876 |
| TCONS_00061954 | lncRNA | downstream | 437341 | 11576673 ~ 11663328 (-) | True | XLOC_030871 |
| TCONS_00061953 | lncRNA | downstream | 437441 | 11576673 ~ 11663228 (-) | False | XLOC_030871 |
| TCONS_00061952 | lncRNA | downstream | 437613 | 11576673 ~ 11663056 (-) | False | XLOC_030871 |
| TCONS_00061951 | lncRNA | downstream | 493959 | 11576673 ~ 11606710 (-) | False | XLOC_030871 |
| TCONS_00061527 | lncRNA | upstream | 562837 | 12835526 ~ 12836607 (-) | True | XLOC_030888 |
| TCONS_00060062 | lncRNA | upstream | 858710 | 13131399 ~ 13167120 (-) | True | XLOC_030890 |
| TCONS_00061956 | lncRNA | upstream | 1004552 | 13277241 ~ 13306705 (-) | True | XLOC_030893 |
| TCONS_00061528 | lncRNA | upstream | 2248433 | 14521122 ~ 14522712 (-) | True | XLOC_030909 |
| TCONS_00061957 | lncRNA | upstream | 2508153 | 14780842 ~ 15176038 (-) | False | XLOC_030911 |
| TCONS_00060035 | mRNA | downstream | 7051 | 12065957 ~ 12093618 (-) | True | XLOC_030878 |
| TCONS_00060034 | mRNA | downstream | 37288 | 12032802 ~ 12063381 (-) | True | XLOC_030877 |
| TCONS_00060033 | mRNA | downstream | 69495 | 12030872 ~ 12031174 (-) | True | XLOC_030876 |
| TCONS_00060030 | mRNA | downstream | 128723 | 11965113 ~ 11971946 (-) | True | XLOC_030875 |
| TCONS_00060029 | mRNA | downstream | 156308 | 11942162 ~ 11944361 (-) | True | XLOC_030874 |
| TCONS_00060042 | mRNA | upstream | 10408 | 12283097 ~ 12525441 (-) | False | XLOC_030879 |
| TCONS_00060043 | mRNA | upstream | 13037 | 12285726 ~ 12407194 (-) | False | XLOC_030879 |
| TCONS_00060046 | mRNA | upstream | 230805 | 12503494 ~ 12524996 (-) | True | XLOC_030879 |
| TCONS_00060047 | mRNA | upstream | 276862 | 12549551 ~ 12560569 (-) | True | XLOC_030882 |
| TCONS_00060048 | mRNA | upstream | 289499 | 12562188 ~ 12587053 (-) | True | XLOC_030883 |
| TCONS_00060031 | other | downstream | 68748 | 11982364 ~ 12031921 (-) | False | XLOC_030876 |
| TCONS_00060014 | other | downstream | 1376004 | 10720894 ~ 10724665 (-) | True | XLOC_030863 |
| TCONS_00060013 | other | downstream | 1591855 | 10507826 ~ 10508814 (-) | True | XLOC_030862 |
| TCONS_00059993 | other | downstream | 2894778 | 9203723 ~ 9205891 (-) | False | XLOC_030847 |
| TCONS_00059992 | other | downstream | 2913763 | 9179822 ~ 9186906 (-) | False | XLOC_030847 |
| TCONS_00060044 | other | upstream | 81032 | 12353721 ~ 12372897 (-) | False | XLOC_030879 |
| TCONS_00060045 | other | upstream | 93520 | 12366209 ~ 12366325 (-) | True | XLOC_030881 |
| TCONS_00060054 | other | upstream | 451773 | 12724462 ~ 12725315 (-) | True | XLOC_030886 |
| TCONS_00060061 | other | upstream | 838246 | 13110935 ~ 13120593 (-) | False | XLOC_030890 |
| TCONS_00060070 | other | upstream | 1260185 | 13532874 ~ 13532988 (-) | True | XLOC_030896 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000071_05002535_05056745.mRNA | True | 5533 | mRNA | 0.48 | 29 | CI01000071 | 5002189 ~ 5057408 (+) |
| bowfin (Amia calva) | AMCG00018670 | True | 4179 | mRNA | 0.48 | 27 | CM030135.1 | 17704494 ~ 17728160 (+) |
