RNA id: TCONS_00005649


Basic Information

Item Value
RNA id TCONS_00005649
length 2721
RNA type mRNA
GC content 0.36
exon number 8
gene id XLOC_003087
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44552548 ~ 44560302 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTCctttcagttttttgtttttgtttcaaaatgagCAAAACCGAGAAACCTTTATCCACTCTTTGGGGTTGTGAACTCAATGAATCTAATAAAGAGGAGTCCTTCAAGACTGATGACACCAACCATCAGCACCAGCTGGCTCTGAGAACGATGTGTCTCGGTCACACCGCCAAAGATGAGTTCAATATTGTCGAGCTGGTCACCGGCGAGGGAAACAGTAACGCCAAGGCGGTTCCCATAGCAACGCTTCACGCGAAATCCATGCCAACGGTTAACCTGTCTGGTTTGGATCTTCATCCACCGGTGACCTTTCGCCTGAAGCACGGCTCTGGTCCGGTGTTTGTCGGAGCGGAGCATGTGGCCTTGGAGGAGTACTCTGACGAAGAAGAGCTGGACGAGGAGATGGACGAGGAggtggaagaagaggaggaagataTCGAAGAATCGCCTGTTAAGAAAGTCACAAAAAACAGTGCTGGCAAAAGAAAGAAGCCAGAAAAGGGAGAAGATGAGGAAGCATCAGATGGAGAAAATCCTCCAAAAAAGGGTAAAGGAAGAGGACGGAAGGCGAAGGCGTGACCAGGCAAGAACTTTTATACTAACAGATGTCCCAAATTGCATGCTGTTCTTGTGCACTGTTCTACACCACTTCATAGTTCGAATATTAAaatgggagggggggggggtgcttAAAGAGTGGAAAATTGAACATTTTTGCTTGTGTAGTGAAAAAGGAAAAAGCTATCGGGTGATGAGCTGAAGAGGAGGAGCCAGgcttaaggggaggagctattggGTGTTATGCATGAGGGAAGAAGCTATCTGGTGCAAAATGGAGGGACAATTGGGTGAAGGGAAAGGAGCTATTGGGTGCTGAGCTGAAGGGGAGGCGCTATTGGGACCTAAGTGGAGGGGAGGAGCAATTGGGTGGTGAGCTTGTGGTGAAGCTATTGGGTGCAAGTTTAAACTTGCGGAGGAAGTATCAGGTGCTGAGCCTaagggaagtgtgtgtgtgtgtgtggtaatttACAGgatgtacttttttatttatttattttttcccctttttctaCATCTGCAGTTTTGTCAAATGGCCTAACGAATCTATTCTATAGCTTTGCAATAAACATTTTATCCCATGAGGCCACGAGGTAATTAAGATCCTAAACTTTGTTTCCTTTAATGTCGTTTACATTCTTCCCCTCGTTCCCCTTTTTAAATGACTTGTATGCTATGAATTTGGATTACCTCATTTAAATGCTATCTAGTAGGAAAGCTTTGacaattttgttaaataataGCTTATTCTTTGAGTGCACCATTCGTGTTCCACTTGATGACACTAAACTTGTACACTACAAGGTCTACTATTGAAGTATAAGTGTGTCTGTTATTTGGGCTGTAACTTGTAATCCTCTGGAGCTGATGGTGTTGTATTGCAGGTGTGGAGGGAAGTGCGTTTCCTCAAAGGCTGGACTCCTGATTTGGGAGCTGTAATTTCTCACTGTGGTCCCGCTGTAGCTCTGCTTCACATCAATAAAAGTGTTGAAGGGGAAGCAAACGGCTCGAGTTTTACTTTGAGTTTGCTTGCATTGCATCTGTGAGCGATTCAAATCTAATTGTAGTTTATGCAAAAGAAGTGACGGGTGAAGTTagcaatctttttttattaatttatttatgtccaATAAAATTGAGACTACAGAAGTGTATCTGTACTCTGCACCAACTACTGGCTTGCATTTAGATCactaaatttatttattgtttgctgccCTTTTTAAACAAATGGATCAGGATCTGTGTTAATGGGGTCTTGTCATGAGGGAGGGCATCTTCTATATTTGGTAGTCTGTAATGTAAATATATGGGGCAATGATGTTGAGCCTCTTGCTGTAAACACTGATATTTGACCTTATTTCTGACATGACTCATTTTAATGGTAATTCTGTATACTATAGTCTATAAATATAAATTGCCTTCTTTCAATAGTGTAACCAATACaataataattctatttttttcttgcattCGATTTCCCATTATTTCACAACCCTAAACTAATAAATTCTGTATTGTATCCTGTAAAGATCTTCTGAGCTAAAATATTTTGGTATTTAAGAGCCAGCTTTATTTGTGGTCGAAATAAAAGTAATGAAATTGAGTTTCAGAAGAATCAATGCtataatgttataaaaaaatgtcattcGTGCTtaatgaaacaaaattaattttaaagtatatttaacaTGGGAcaaagattaatcacatccaaaataggTTTTTGAAATGTATTATATGAATTGTATATGTGATAAACGTGCGTACATGGAAAGGAAACCATTTTGGTACAAagctatttaaatgtataaataatttgtgtgtatatataaataattatatatatatatatatatatatatatatatatatatatataaataaataaataaaaaatacaaattatttatacatttaaatatttttgtacatatgtgtgtgtgtgtgtatatatatatttatatctaaatataaataaataaaaaatacaaattatttatacatttaaatatttatctgtctatctctctctctctctctttatctatctatatatacatacacacacacatatatatatatatacatatatatatatatatatatatatacacatatatatacacatatatatatatatatatatacacacatata

Function

GO:

id name namespace
GO:0045740 positive regulation of DNA replication biological_process
GO:0006338 chromatin remodeling biological_process
GO:0007275 multicellular organism development biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-125 Predicted to enable RNA binding activity; chromatin binding activity; and histone binding activity. Predicted to be involved in chromatin remodeling and positive regulation of DNA replication. Predicted to be located in nucleus. Predicted to be active in cytoplasm; nucleolus; and nucleoplasm. Is expressed in eye; gill; muscle; ovary; and unfertilized egg. Orthologous to human NPM2 (nucleophosmin/nucleoplasmin 2).

Ensembl:

ensembl_id ENSDART00000181217

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005646 lncRNA downstream 50829 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA downstream 50829 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006135 lncRNA downstream 164746 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005636 lncRNA downstream 276663 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 299444 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00006136 lncRNA upstream 414071 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 487064 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00006138 lncRNA upstream 488350 45048515 ~ 45051538 (-) True XLOC_003094
TCONS_00006139 lncRNA upstream 795459 45355624 ~ 45357482 (-) True XLOC_003097
TCONS_00005648 mRNA downstream 35362 44513231 ~ 44517186 (-) True XLOC_003086
TCONS_00005647 mRNA downstream 44299 44503819 ~ 44508249 (-) True XLOC_003085
TCONS_00005644 mRNA downstream 69637 44473851 ~ 44482911 (-) True XLOC_003083
TCONS_00005643 mRNA downstream 85164 44462447 ~ 44467384 (-) True XLOC_003082
TCONS_00005642 mRNA downstream 141516 44408675 ~ 44411032 (-) True XLOC_003081
TCONS_00005651 mRNA upstream 208885 44769050 ~ 44788554 (-) True XLOC_003088
TCONS_00005652 mRNA upstream 357186 44917351 ~ 44924289 (-) True XLOC_003089
TCONS_00005653 mRNA upstream 419368 44979533 ~ 44981295 (-) True XLOC_003091
TCONS_00005654 mRNA upstream 436897 44997062 ~ 45002196 (-) True XLOC_003092
TCONS_00005655 mRNA upstream 455060 45015225 ~ 45029041 (-) True XLOC_003093
TCONS_00005629 other downstream 534883 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 536809 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 719880 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 793016 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 793069 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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