RNA id: TCONS_00005651


Basic Information

Item Value
RNA id TCONS_00005651
length 1476
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_003088
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44769050 ~ 44788554 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGACAACTGTGCGCGCGTTTGGAGAGGCGCGCTCGCGACTCAGCGGATCCTCAGCGCATTTCTTCAACTCATTTTTGGAGGCTCTATAATTCACAAAACAAACCTCAAAACAACAAAAACGCCAACTTCCCCTTGTTAAAATGCCTGTTCTCTGATATATTAGTCCACCATGGATCCGCTGTACATCACTTCGCCAAACTCGAGCGCCGATAACGGGAGCGCCGGTTCTCCGGTAAACGACACGGAGGTGTTCGGGAACCAGTTCGTGCAGCCGGTCTGGCAGATCGTACTATGGGCTATCGCGTACTGCACTATAGTTCTGGTGTCGGTAGTGGGAAATATCACGGTGATCTGGATCATTTTAGCGCATAAGCGCATGAGGACGGTCACCAACTACTTTCTGGTGAATCTGGCGTTCGCGGAGGCGTCCATGTCCGCCTTTAACACCGTCATTAACTTTATTTACGCGGTGCACAATGAGTGGTACTTCGGGCTGGTTTACTGCAGGTTTCATAACTTCTTCCCGATTGCAGCTGTCTTCGCCAGTATTTACTCTATGACCGCTATAGCTCTGGACAGGTATATGGCGATCATCCACCCGCTCCAGCAGCGTCTGTCGTCCGCTGAGACTAAACTGGTGGTGTGTGTGATCTGGGCGCTGGCGCTAATGCTGGCGTTCCCTCAGTATTATTTCTCCAGCACGGCTCAGCTGCCGGGACGCGTCGTGTGCTACATTAACTGGCCGGAATACAGCATGTGGGACTTCCAAAAGACGTATTACGTCTGTGTGGTTGTGCTCATCTATTTTCTGCCTCTGCTGGTCATGGGTTGTGCTTACCTGGTGGTGGGATGTTTTCTGTGGGCGAGCGAGATTCCTGGAGACTCTTCAGATCGGTATCGAGAGCAGCTGATCGCCAAACGCAAGGTGGTGAAGATGATGATCGTCGTAGTGTGCACCTTCGCCGTCTGCTGGCTCCCCTATCATGTCTACTTCATAGTGCACCAGTTTCTTCCACACTTGTTTGAGGAACGCTACATCCAGCAGGTCTACTTGGGGATAATGTGGCTTGCTATGAGCTCCACCATGTACAATCCCATCATCTACTGTCTTCTCAACGACAGGTTTCGAGCGGGATTCCAGCAGGCGTTTTCCTGGTGTCCGTGCGTCCCTCAAGGCTCATATGAAGGTCTGGAGCTCAAGTCTACTCGCTATCTTCAGACGCAGGCCAGCATCTTCAGGGCCAGCCGAATGGAAACCACAGTATCCACAGTGATGCCAACTGGAGACGGAGAACTTCCAGAGAATCCAAACCGAAGCTCCGTAGATCTCACGTCCAATGGCTCTTCTCGAAGTGCCTCAAAAACCGTCTCCGAGTCCTCCTTCTATTCCAGTAACAACGTAGCATAGAAAGAAACGTAGGAAGTATTTGTAGTattattttagatgttagttttagTCTTTGTAGTTTCAGTC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0071314 cellular response to cocaine biological_process
GO:1902093 positive regulation of flagellated sperm motility biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0097225 sperm midpiece cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016496 substance P receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-17 Predicted to enable substance P receptor activity. Acts upstream of or within cellular response to cocaine. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in central nervous system and somite. Human ortholog(s) of this gene implicated in exercise-induced bronchoconstriction. Orthologous to human TACR1 (tachykinin receptor 1).

Ensembl:

ensembl_id ENSDART00000166965

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005646 lncRNA downstream 267331 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA downstream 267331 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006135 lncRNA downstream 381248 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005636 lncRNA downstream 493165 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 515946 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00006136 lncRNA upstream 185682 44974236 ~ 44976643 (-) True XLOC_003090
TCONS_00006137 lncRNA upstream 258675 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00006138 lncRNA upstream 259961 45048515 ~ 45051538 (-) True XLOC_003094
TCONS_00006139 lncRNA upstream 567070 45355624 ~ 45357482 (-) True XLOC_003097
TCONS_00005650 mRNA downstream 208748 44553709 ~ 44560302 (-) True XLOC_003087
TCONS_00005649 mRNA downstream 208885 44552548 ~ 44560165 (-) False XLOC_003087
TCONS_00005648 mRNA downstream 251864 44513231 ~ 44517186 (-) True XLOC_003086
TCONS_00005647 mRNA downstream 260801 44503819 ~ 44508249 (-) True XLOC_003085
TCONS_00005644 mRNA downstream 286139 44473851 ~ 44482911 (-) True XLOC_003083
TCONS_00005652 mRNA upstream 128797 44917351 ~ 44924289 (-) True XLOC_003089
TCONS_00005653 mRNA upstream 190979 44979533 ~ 44981295 (-) True XLOC_003091
TCONS_00005654 mRNA upstream 208508 44997062 ~ 45002196 (-) True XLOC_003092
TCONS_00005655 mRNA upstream 226671 45015225 ~ 45029041 (-) True XLOC_003093
TCONS_00005656 mRNA upstream 265023 45053577 ~ 45058886 (-) True XLOC_003095
TCONS_00005629 other downstream 751385 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 753311 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 936382 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 1009518 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 1009571 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01921098_01929676.mRNA True 1745 mRNA 0.47 5 CI01000158 1920592 ~ 1929676 (-)